Detailed information NTG0405394

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GOQ05_RS01605
• Genome accession: NZ_CP046552
• Coordinates: 338129..338989 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152274.1
• Uniprot ID: A0AAP1QVT1
• Organism: Acinetobacter baumannii strain 19WIARLN021_full
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 333129..343989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOQ05_RS01580 (GOQ05_01570)	-	334020..335330 (+)	1311	WP_000753284.1	tetratricopeptide repeat protein	-
GOQ05_RS01585 (GOQ05_01575)	-	335407..335733 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
GOQ05_RS01590 (GOQ05_01580)	rlmB	335835..336584 (+)	750	WP_001118148.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GOQ05_RS01595 (GOQ05_01585)	-	336620..337534 (+)	915	WP_000075013.1	DMT family transporter	-
GOQ05_RS01600 (GOQ05_01590)	coaE	337531..338127 (-)	597	WP_000874122.1	dephospho-CoA kinase	-
GOQ05_RS01605 (GOQ05_01595)	pilD	338129..338989 (-)	861	WP_001152274.1	A24 family peptidase	Machinery gene
GOQ05_RS01610 (GOQ05_01600)	pilC	338989..340215 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
GOQ05_RS01615 (GOQ05_01605)	pilB	340245..341957 (-)	1713	WP_001274981.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GOQ05_RS01620 (GOQ05_01610)	tpiA	342248..343042 (+)	795	WP_000016941.1	triose-phosphate isomerase	-
GOQ05_RS01625 (GOQ05_01615)	secG	343055..343384 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32078.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=405394 GOQ05_RS01605 WP_001152274.1 338129..338989(-) (pilD) [Acinetobacter baumannii strain 19WIARLN021_full]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=405394 GOQ05_RS01605 WP_001152274.1 338129..338989(-) (pilD) [Acinetobacter baumannii strain 19WIARLN021_full]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434