Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HXT67_RS41450 Genome accession   NZ_CP058354
Coordinates   8821514..8822116 (-) Length   200 a.a.
NCBI ID   WP_014491379.1    Uniprot ID   A0ABV2RKC3
Organism   Bradyrhizobium japonicum strain 5038     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8816514..8827116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXT67_RS41430 def 8817481..8818005 (-) 525 WP_014491383.1 peptide deformylase -
  HXT67_RS41435 rmuC 8818177..8819376 (+) 1200 WP_039227372.1 DNA recombination protein RmuC -
  HXT67_RS41440 - 8819568..8820932 (+) 1365 WP_014491381.1 MFS transporter -
  HXT67_RS41445 - 8821050..8821487 (-) 438 WP_014491380.1 hypothetical protein -
  HXT67_RS41450 recR 8821514..8822116 (-) 603 WP_014491379.1 recombination mediator RecR Machinery gene
  HXT67_RS41455 - 8822118..8822438 (-) 321 WP_014491378.1 YbaB/EbfC family nucleoid-associated protein -
  HXT67_RS41460 - 8822561..8824381 (-) 1821 WP_014491377.1 DNA polymerase III subunit gamma/tau -
  HXT67_RS41470 - 8824679..8825680 (-) 1002 WP_039154670.1 GlxA family transcriptional regulator -
  HXT67_RS41475 - 8825784..8826425 (+) 642 WP_014491375.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21352.67 Da        Isoelectric Point: 6.4836

>NTDB_id=405366 HXT67_RS41450 WP_014491379.1 8821514..8822116(-) (recR) [Bradyrhizobium japonicum strain 5038]
MGSVAGPEIERLVQLLARLPGLGPRSARRAALHLIKKREALMMPLSSALQVALDKVQVCKTCGNIDTQNPCTVCTDPKRD
PAIIVVVADVADLWALERANATQGRYHVLGATLSPLDGVGPQDLTIDALVARAHAAEVHEIILALNATVDGQTTAHYITD
LLQDANVKVTRLAHGVPVGGELDYLDEGTLSAAMRQRTLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=405366 HXT67_RS41450 WP_014491379.1 8821514..8822116(-) (recR) [Bradyrhizobium japonicum strain 5038]
ATGGGTTCGGTTGCAGGTCCCGAAATCGAGCGGCTGGTCCAGCTTCTCGCACGGCTGCCGGGCTTGGGCCCGCGCTCCGC
GCGGCGTGCGGCGCTGCATCTGATCAAGAAGCGCGAAGCGCTGATGATGCCGCTGTCTTCGGCGCTGCAGGTCGCGCTCG
ACAAGGTCCAGGTCTGCAAGACCTGCGGCAACATCGACACGCAAAATCCCTGCACCGTCTGCACCGATCCGAAGCGCGAT
CCCGCAATCATCGTCGTGGTCGCCGATGTCGCCGACCTCTGGGCGCTGGAGCGGGCCAATGCGACCCAGGGCCGCTATCA
CGTGCTGGGCGCGACCTTGTCGCCGCTCGACGGCGTCGGCCCGCAGGATCTCACCATCGACGCGCTGGTCGCGCGCGCGC
ATGCTGCCGAGGTGCATGAGATCATCCTGGCGCTGAACGCGACGGTCGACGGCCAGACCACGGCGCACTACATCACCGAC
CTGCTTCAGGACGCCAACGTAAAAGTAACCCGGCTGGCCCATGGTGTGCCGGTCGGTGGCGAGCTTGATTATCTCGACGA
AGGTACGCTATCGGCCGCCATGCGGCAGCGGACCCTGTTCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(44-80)

Toprim domain (Toprim_4)

(83-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.979

95.5

0.42
  recR Bacillus subtilis subsp. subtilis str. 168

41.667

96

0.4
  recR Streptococcus pneumoniae R6

38.421

95

0.365

Multiple sequence alignment