Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SSGZ1_RS09970 Genome accession   NC_017617
Coordinates   2024144..2025238 (+) Length   364 a.a.
NCBI ID   WP_012028050.1    Uniprot ID   A0A0H3N2H6
Organism   Streptococcus suis GZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019144..2030238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSGZ1_RS09945 (SSGZ1_1972) pgsA 2019663..2020202 (-) 540 WP_012028045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SSGZ1_RS09950 (SSGZ1_1973) rodZ 2020212..2021069 (-) 858 WP_012028600.1 cytoskeleton protein RodZ -
  SSGZ1_RS09955 (SSGZ1_1974) yfmH 2021151..2022434 (-) 1284 WP_012775413.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SSGZ1_RS09960 (SSGZ1_1975) yfmF 2022431..2023684 (-) 1254 WP_012028048.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SSGZ1_RS09965 (SSGZ1_1976) yaaA 2023758..2024141 (+) 384 WP_012028049.1 S4 domain-containing protein YaaA -
  SSGZ1_RS09970 (SSGZ1_1977) recF 2024144..2025238 (+) 1095 WP_012028050.1 DNA replication/repair protein RecF Machinery gene
  SSGZ1_RS09975 (SSGZ1_1978) guaB 2025510..2026991 (-) 1482 WP_012028051.1 IMP dehydrogenase -
  SSGZ1_RS09980 (SSGZ1_1979) trpS 2027223..2028248 (-) 1026 WP_012775414.1 tryptophan--tRNA ligase -
  SSGZ1_RS09985 (SSGZ1_1981) - 2028603..2029475 (+) 873 WP_012775460.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.24 Da        Isoelectric Point: 6.9173

>NTDB_id=40535 SSGZ1_RS09970 WP_012028050.1 2024144..2025238(+) (recF) [Streptococcus suis GZ1]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=40535 SSGZ1_RS09970 WP_012028050.1 2024144..2025238(+) (recF) [Streptococcus suis GZ1]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment