Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   GOQ06_RS17375 Genome accession   NZ_CP046546
Coordinates   3619284..3619757 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain 19WIARLN023_full     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3614284..3624757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ06_RS17360 (GOQ06_17185) pilX 3616913..3617731 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOQ06_RS17365 (GOQ06_17190) pilW 3617728..3618729 (-) 1002 WP_163063057.1 PilW family protein Machinery gene
  GOQ06_RS17370 (GOQ06_17195) pilV 3618730..3619290 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  GOQ06_RS17375 (GOQ06_17200) fimU 3619284..3619757 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOQ06_RS17380 (GOQ06_17205) ispH 3619927..3620877 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOQ06_RS17385 (GOQ06_17210) gmk 3621000..3621629 (+) 630 WP_000015937.1 guanylate kinase -
  GOQ06_RS17390 (GOQ06_17215) rpoZ 3621702..3621980 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOQ06_RS17395 (GOQ06_17220) - 3622019..3622148 (+) 130 Protein_3403 hypothetical protein -
  GOQ06_RS17400 (GOQ06_17225) - 3622188..3624293 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=405327 GOQ06_RS17375 WP_001214061.1 3619284..3619757(-) (fimU) [Acinetobacter baumannii strain 19WIARLN023_full]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=405327 GOQ06_RS17375 WP_001214061.1 3619284..3619757(-) (fimU) [Acinetobacter baumannii strain 19WIARLN023_full]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment