Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   GOQ06_RS17365 Genome accession   NZ_CP046546
Coordinates   3617728..3618729 (-) Length   333 a.a.
NCBI ID   WP_163063057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 19WIARLN023_full     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3612728..3623729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ06_RS17355 (GOQ06_17180) pilY1 3613047..3616901 (-) 3855 WP_216074186.1 PilC/PilY family type IV pilus protein Machinery gene
  GOQ06_RS17360 (GOQ06_17185) pilX 3616913..3617731 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOQ06_RS17365 (GOQ06_17190) pilW 3617728..3618729 (-) 1002 WP_163063057.1 PilW family protein Machinery gene
  GOQ06_RS17370 (GOQ06_17195) pilV 3618730..3619290 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  GOQ06_RS17375 (GOQ06_17200) fimU 3619284..3619757 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOQ06_RS17380 (GOQ06_17205) ispH 3619927..3620877 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOQ06_RS17385 (GOQ06_17210) gmk 3621000..3621629 (+) 630 WP_000015937.1 guanylate kinase -
  GOQ06_RS17390 (GOQ06_17215) rpoZ 3621702..3621980 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOQ06_RS17395 (GOQ06_17220) - 3622019..3622148 (+) 130 Protein_3403 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35887.57 Da        Isoelectric Point: 5.3062

>NTDB_id=405325 GOQ06_RS17365 WP_163063057.1 3617728..3618729(-) (pilW) [Acinetobacter baumannii strain 19WIARLN023_full]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPEVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=405325 GOQ06_RS17365 WP_163063057.1 3617728..3618729(-) (pilW) [Acinetobacter baumannii strain 19WIARLN023_full]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGAGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994

Multiple sequence alignment