Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | GOQ06_RS08980 | Genome accession | NZ_CP046546 |
| Coordinates | 1856690..1857070 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 19WIARLN023_full | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1851690..1862070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOQ06_RS08950 (GOQ06_08855) | kdsB | 1852593..1853354 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| GOQ06_RS08955 (GOQ06_08860) | - | 1853366..1854346 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| GOQ06_RS08960 (GOQ06_08865) | - | 1854358..1854699 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| GOQ06_RS08965 (GOQ06_08870) | - | 1854717..1855490 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| GOQ06_RS08970 (GOQ06_08875) | - | 1855528..1856136 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| GOQ06_RS08975 (GOQ06_08880) | - | 1856146..1856700 (+) | 555 | WP_000841374.1 | type II secretion system protein | - |
| GOQ06_RS08980 (GOQ06_08885) | xcpV | 1856690..1857070 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| GOQ06_RS08985 (GOQ06_08890) | xcpW | 1857070..1857771 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| GOQ06_RS08990 (GOQ06_08895) | gspK | 1857771..1858730 (+) | 960 | WP_000301468.1 | type II secretion system minor pseudopilin GspK | - |
| GOQ06_RS08995 (GOQ06_08900) | - | 1858960..1859556 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| GOQ06_RS09000 (GOQ06_08905) | ung | 1859607..1860320 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| GOQ06_RS09005 (GOQ06_08910) | - | 1860317..1861441 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GOQ06_RS09010 (GOQ06_08915) | tadA | 1861448..1861951 (+) | 504 | WP_031954106.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=405311 GOQ06_RS08980 WP_000836911.1 1856690..1857070(+) (xcpV) [Acinetobacter baumannii strain 19WIARLN023_full]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=405311 GOQ06_RS08980 WP_000836911.1 1856690..1857070(+) (xcpV) [Acinetobacter baumannii strain 19WIARLN023_full]
ATGAAATCTAAAGGTTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGTTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |