Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | GOD87_RS08050 | Genome accession | NZ_CP046536 |
| Coordinates | 1687448..1687828 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836912.1 | Uniprot ID | A0AAP1R0C8 |
| Organism | Acinetobacter baumannii strain XL380 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1682448..1692828
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOD87_RS08020 (GOD87_08020) | kdsB | 1683351..1684112 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| GOD87_RS08025 (GOD87_08025) | - | 1684124..1685104 (+) | 981 | WP_057092777.1 | DNA polymerase III subunit delta' | - |
| GOD87_RS08030 (GOD87_08030) | - | 1685116..1685457 (+) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| GOD87_RS08035 (GOD87_08035) | - | 1685475..1686248 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| GOD87_RS08040 (GOD87_08040) | - | 1686286..1686894 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| GOD87_RS08045 (GOD87_08045) | - | 1686904..1687458 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| GOD87_RS08050 (GOD87_08050) | xcpV | 1687448..1687828 (+) | 381 | WP_000836912.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| GOD87_RS08055 (GOD87_08055) | xcpW | 1687828..1688529 (+) | 702 | WP_000594582.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| GOD87_RS08060 (GOD87_08060) | gspK | 1688529..1689488 (+) | 960 | WP_057092779.1 | type II secretion system minor pseudopilin GspK | - |
| GOD87_RS08065 (GOD87_08065) | - | 1689718..1690314 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| GOD87_RS08070 (GOD87_08070) | ung | 1690365..1691078 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| GOD87_RS08075 (GOD87_08075) | - | 1691075..1692199 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GOD87_RS08080 (GOD87_08080) | tadA | 1692206..1692709 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13965.16 Da Isoelectric Point: 9.8004
>NTDB_id=405238 GOD87_RS08050 WP_000836912.1 1687448..1687828(+) (xcpV) [Acinetobacter baumannii strain XL380]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=405238 GOD87_RS08050 WP_000836912.1 1687448..1687828(+) (xcpV) [Acinetobacter baumannii strain XL380]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |