Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GOD87_RS00950 Genome accession   NZ_CP046536
Coordinates   199218..200639 (-) Length   473 a.a.
NCBI ID   WP_057093973.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XL380     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 194218..205639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS00935 (GOD87_00935) lptG 195271..196341 (+) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -
  GOD87_RS00940 (GOD87_00940) gpmI 196467..198014 (+) 1548 WP_057093975.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GOD87_RS00945 (GOD87_00945) - 198030..199214 (+) 1185 WP_000939107.1 S41 family peptidase -
  GOD87_RS00950 (GOD87_00950) pilR 199218..200639 (-) 1422 WP_057093973.1 sigma-54-dependent transcriptional regulator Regulator
  GOD87_RS00955 (GOD87_00955) pilS 200664..202232 (-) 1569 WP_057093971.1 sensor histidine kinase Regulator
  GOD87_RS00960 (GOD87_00960) - 202243..202878 (-) 636 WP_057093969.1 response regulator -
  GOD87_RS00965 (GOD87_00965) pbpG 203091..204137 (+) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  GOD87_RS00970 (GOD87_00970) thrC 204244..205383 (-) 1140 WP_000063593.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53125.37 Da        Isoelectric Point: 6.9051

>NTDB_id=405220 GOD87_RS00950 WP_057093973.1 199218..200639(-) (pilR) [Acinetobacter baumannii strain XL380]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDVTENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFTSATQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=405220 GOD87_RS00950 WP_057093973.1 199218..200639(-) (pilR) [Acinetobacter baumannii strain XL380]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTATTGATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTACACCAATACTCCCATT
GCAGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAATAGAGCATGATGTTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATCTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCGATTAACTGCGGTGCTATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTAGTTCGACAGGGCAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGACG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTACTTCGGCTACTCAAAGC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCCCTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.52

100

0.985
  pilR Pseudomonas aeruginosa PAK

50.763

97.04

0.493

Multiple sequence alignment