Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HXP32_RS03530 Genome accession   NZ_CP058340
Coordinates   705919..706467 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain 20A420     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 700919..711467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS03500 (HXP32_03510) ctsT 700962..701267 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  HXP32_RS03505 (HXP32_03515) proC 701264..702001 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  HXP32_RS03510 (HXP32_03520) fliW 702001..702390 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  HXP32_RS03515 (HXP32_03525) - 702554..703201 (+) 648 WP_065980000.1 outer membrane protein assembly factor BamD -
  HXP32_RS03520 (HXP32_03530) lon 703217..705592 (+) 2376 WP_002783351.1 endopeptidase La -
  HXP32_RS03525 (HXP32_03535) rpsR 705648..705908 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  HXP32_RS03530 (HXP32_03540) ssb 705919..706467 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  HXP32_RS03535 (HXP32_03545) rpsF 706476..706853 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  HXP32_RS03540 (HXP32_03550) - 707133..708404 (+) 1272 WP_002777080.1 MFS transporter -
  HXP32_RS03545 (HXP32_03555) - 708404..709405 (+) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase -
  HXP32_RS03550 (HXP32_03560) - 709398..710039 (-) 642 Protein_701 DUF535 family protein -
  HXP32_RS08800 - 710003..710254 (-) 252 WP_048813181.1 hypothetical protein -
  HXP32_RS03555 (HXP32_03565) rseP 710251..711354 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=405207 HXP32_RS03530 WP_002777084.1 705919..706467(-) (ssb) [Campylobacter coli strain 20A420]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=405207 HXP32_RS03530 WP_002777084.1 705919..706467(-) (ssb) [Campylobacter coli strain 20A420]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATTGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment