Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   HXP32_RS03500 Genome accession   NZ_CP058340
Coordinates   700962..701267 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain 20A420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695962..706267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS03465 (HXP32_03475) - 696377..697138 (+) 762 WP_141070047.1 ATP-binding protein -
  HXP32_RS03470 (HXP32_03480) - 697135..697818 (+) 684 WP_002777124.1 3-methyladenine DNA glycosylase -
  HXP32_RS03475 (HXP32_03485) thiD 697818..698630 (+) 813 WP_002822374.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HXP32_RS03480 (HXP32_03490) thiE 698620..699252 (+) 633 WP_002783359.1 thiamine phosphate synthase -
  HXP32_RS03485 (HXP32_03495) - 699230..699859 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  HXP32_RS03490 (HXP32_03500) - 699852..700304 (-) 453 WP_002777117.1 hypothetical protein -
  HXP32_RS03495 (HXP32_03505) - 700301..700969 (-) 669 WP_002780245.1 hypothetical protein -
  HXP32_RS03500 (HXP32_03510) ctsT 700962..701267 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  HXP32_RS03505 (HXP32_03515) proC 701264..702001 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  HXP32_RS03510 (HXP32_03520) fliW 702001..702390 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  HXP32_RS03515 (HXP32_03525) - 702554..703201 (+) 648 WP_065980000.1 outer membrane protein assembly factor BamD -
  HXP32_RS03520 (HXP32_03530) lon 703217..705592 (+) 2376 WP_002783351.1 endopeptidase La -
  HXP32_RS03525 (HXP32_03535) rpsR 705648..705908 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=405205 HXP32_RS03500 WP_002790525.1 700962..701267(-) (ctsT) [Campylobacter coli strain 20A420]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=405205 HXP32_RS03500 WP_002790525.1 700962..701267(-) (ctsT) [Campylobacter coli strain 20A420]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475