Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | GM695_RS04390 | Genome accession | NZ_CP046531 |
| Coordinates | 866866..867420 (+) | Length | 184 a.a. |
| NCBI ID | WP_159629170.1 | Uniprot ID | A0A7H8UPD7 |
| Organism | Mannheimia pernigra strain ZY170218 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 861866..872420
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM695_RS04365 (GM695_04360) | - | 861893..862753 (+) | 861 | WP_159629165.1 | metal ABC transporter permease | - |
| GM695_RS04370 (GM695_04365) | - | 862746..863570 (+) | 825 | WP_159629166.1 | metal ABC transporter permease | - |
| GM695_RS04375 (GM695_04370) | - | 863644..864387 (-) | 744 | WP_159629167.1 | metal ABC transporter ATP-binding protein | - |
| GM695_RS04380 (GM695_04375) | - | 864399..865295 (-) | 897 | WP_159629168.1 | metal ABC transporter substrate-binding protein | - |
| GM695_RS04385 (GM695_04380) | - | 865549..866709 (+) | 1161 | WP_159629169.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| GM695_RS04390 (GM695_04385) | pilF | 866866..867420 (+) | 555 | WP_159629170.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| GM695_RS04395 (GM695_04390) | - | 867421..869757 (+) | 2337 | WP_159629171.1 | Tex family protein | - |
| GM695_RS04400 (GM695_04395) | - | 869798..870619 (-) | 822 | WP_159629172.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| GM695_RS04405 (GM695_04400) | - | 870621..871184 (-) | 564 | WP_159629173.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 21095.05 Da Isoelectric Point: 8.4270
>NTDB_id=405150 GM695_RS04390 WP_159629170.1 866866..867420(+) (pilF) [Mannheimia pernigra strain ZY170218]
MFAKFFSKITACIILFLLAACSSRFQPSSDAEFNRSEAVKARINLALAYLEQSNFPKAKQNIDKALIHDEKDYLPYSVLA
YYYQKTGDTENAEKSYQTALNLSKNRPDVLNNYGTFLCKQGQFQQAYHQFEQAVESEAPYYHQADTLENIILCAKKEPNL
NKITETLTKLEKLDKQRAILLKGK
MFAKFFSKITACIILFLLAACSSRFQPSSDAEFNRSEAVKARINLALAYLEQSNFPKAKQNIDKALIHDEKDYLPYSVLA
YYYQKTGDTENAEKSYQTALNLSKNRPDVLNNYGTFLCKQGQFQQAYHQFEQAVESEAPYYHQADTLENIILCAKKEPNL
NKITETLTKLEKLDKQRAILLKGK
Nucleotide
Download Length: 555 bp
>NTDB_id=405150 GM695_RS04390 WP_159629170.1 866866..867420(+) (pilF) [Mannheimia pernigra strain ZY170218]
ATGTTTGCAAAATTTTTCTCAAAAATAACCGCTTGTATAATACTATTTTTATTAGCAGCGTGTTCTTCTCGCTTTCAGCC
TTCCTCTGATGCAGAATTTAATCGATCGGAAGCGGTGAAAGCTCGCATTAATCTTGCTTTGGCTTATTTAGAGCAGAGCA
ATTTCCCCAAAGCGAAACAAAATATTGATAAAGCCCTGATTCACGATGAAAAGGATTATCTACCTTATTCGGTATTGGCG
TACTATTATCAAAAAACAGGGGATACTGAAAATGCTGAAAAATCCTATCAAACTGCCCTAAATTTAAGTAAAAATCGACC
TGATGTTTTAAATAATTACGGTACTTTTTTATGTAAGCAAGGTCAATTTCAGCAAGCTTATCATCAATTTGAACAAGCAG
TTGAAAGCGAAGCACCTTATTACCATCAGGCAGATACTTTAGAAAACATCATTTTATGTGCGAAAAAAGAGCCGAATCTG
AATAAAATAACGGAAACCTTAACTAAGCTCGAAAAATTAGACAAACAACGAGCAATTTTATTGAAAGGAAAGTAA
ATGTTTGCAAAATTTTTCTCAAAAATAACCGCTTGTATAATACTATTTTTATTAGCAGCGTGTTCTTCTCGCTTTCAGCC
TTCCTCTGATGCAGAATTTAATCGATCGGAAGCGGTGAAAGCTCGCATTAATCTTGCTTTGGCTTATTTAGAGCAGAGCA
ATTTCCCCAAAGCGAAACAAAATATTGATAAAGCCCTGATTCACGATGAAAAGGATTATCTACCTTATTCGGTATTGGCG
TACTATTATCAAAAAACAGGGGATACTGAAAATGCTGAAAAATCCTATCAAACTGCCCTAAATTTAAGTAAAAATCGACC
TGATGTTTTAAATAATTACGGTACTTTTTTATGTAAGCAAGGTCAATTTCAGCAAGCTTATCATCAATTTGAACAAGCAG
TTGAAAGCGAAGCACCTTATTACCATCAGGCAGATACTTTAGAAAACATCATTTTATGTGCGAAAAAAGAGCCGAATCTG
AATAAAATAACGGAAACCTTAACTAAGCTCGAAAAATTAGACAAACAACGAGCAATTTTATTGAAAGGAAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
62.5 |
100 |
0.625 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
47.953 |
92.935 |
0.446 |