Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GOM46_RS05230 Genome accession   NZ_CP046525
Coordinates   1041095..1043062 (-) Length   655 a.a.
NCBI ID   WP_006151229.1    Uniprot ID   F5W2D0
Organism   Streptococcus infantis strain SO     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036095..1048062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS05190 (GOM46_05180) - 1036276..1036773 (-) 498 WP_006151250.1 GAF domain-containing protein -
  GOM46_RS05195 (GOM46_05185) rpsA 1036859..1038061 (-) 1203 WP_006145742.1 30S ribosomal protein S1 -
  GOM46_RS05210 (GOM46_05200) - 1038431..1038661 (-) 231 WP_178894876.1 DUF2969 domain-containing protein -
  GOM46_RS05215 (GOM46_05205) pcp 1038796..1039440 (-) 645 WP_006151221.1 pyroglutamyl-peptidase I -
  GOM46_RS05220 (GOM46_05210) - 1039454..1040377 (-) 924 WP_006151282.1 DUF979 domain-containing protein -
  GOM46_RS05225 (GOM46_05215) - 1040374..1041063 (-) 690 WP_006151190.1 DUF969 domain-containing protein -
  GOM46_RS05230 (GOM46_05220) amiA3 1041095..1043062 (-) 1968 WP_006151229.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS05235 (GOM46_05225) - 1043084..1044106 (-) 1023 WP_006151265.1 branched-chain amino acid aminotransferase -
  GOM46_RS05240 (GOM46_05230) parC 1044231..1046708 (-) 2478 WP_080560912.1 DNA topoisomerase IV subunit A -
  GOM46_RS05245 (GOM46_05235) - 1047036..1047857 (-) 822 WP_025170063.1 aminoglycoside 6-adenylyltransferase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72730.23 Da        Isoelectric Point: 4.9501

>NTDB_id=405074 GOM46_RS05230 WP_006151229.1 1041095..1043062(-) (amiA3) [Streptococcus infantis strain SO]
MKTKKWMLTAGVVLSTAVLLVACGKADKEADAPTTFSYVYGVDPSSLDYSIATRTSTTDIIGNVVDGLLENDEYGNLVPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVTLIQNSIKGLNEYMTGETNDFSTVG
VKALDDYTVQYTLNAPESFWNSKVTSATMLPVNEEFLKASGKNYGAVSPSGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKVKLTYYDGSDQESLIRSFSSGVYTTARIFPSSSNFASTLEQYGDKITYSPQDSTSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQSGGKNFGDIAQAELVNYGDQWKGVE
LVDGKDTIYNPDKAKASFEKAKKELEAKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGSENVVIDVLQMTDNEKE
SITSQARVPAQKDYDLNSTGWAPSYQDPASYLNIMDPKTGSAMKHLGITKGKDKEVVAQLGLDEYKKLLDDAVSETNDLD
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKEIVTAKEYQAALEKWQKEKL
ESNNKYQKELESHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=405074 GOM46_RS05230 WP_006151229.1 1041095..1043062(-) (amiA3) [Streptococcus infantis strain SO]
ATGAAAACGAAAAAGTGGATGTTAACAGCAGGAGTTGTCCTGAGTACAGCTGTACTTCTCGTAGCTTGTGGTAAAGCTGA
CAAGGAAGCAGACGCACCTACTACCTTCTCTTACGTCTATGGAGTAGACCCATCATCTTTGGACTACAGTATTGCAACTC
GTACTTCAACAACGGATATCATCGGTAACGTTGTTGATGGTTTGTTGGAAAATGACGAATACGGAAATTTGGTTCCGTCT
CTAGCTGAGGATTGGAGCGTCTCACAAGACGGTTTGACTTATACTTATAAACTTCGTAAAGGAGTTAAATGGTATACTTC
AGAGGGTGAAGAATACGCTGAAGTAACTGCGCATGACTTTGTTACAGGATTGAAACACGTTGCAGATGGTAAATCAGACG
GTGTCACTCTTATTCAAAACTCCATCAAGGGCTTGAATGAATATATGACTGGTGAGACTAACGACTTCTCAACAGTTGGG
GTTAAGGCGTTGGACGATTACACAGTCCAGTACACTCTTAATGCACCTGAAAGTTTTTGGAATTCAAAAGTGACTTCAGC
AACTATGTTGCCGGTAAATGAAGAATTCCTTAAAGCTTCAGGTAAAAATTACGGAGCTGTCAGCCCATCAGGTATCCTTT
ATAACGGTCCATATATCTTGAAGACTTTGACTTCAAAATCTTTAATCGAATACGAAAAGAATCCAAATTATTGGGATAAA
GAGAAGGTTAAAATCGAGAAGGTTAAATTGACTTACTATGATGGTTCAGACCAAGAATCATTAATCCGTAGTTTCTCTTC
AGGTGTTTATACAACAGCTCGTATCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTAGAACAATACGGAGATAAAATCA
CCTATAGTCCACAGGATTCAACTAGTTATTACTTTACCTTTAACGTAAACCGTCAATCTTATAATAAGACTGCGAAGACA
AGTGAAGAACAGAAAACTTCTACAAAAGAAGCAATGCTGAACAAGGACTTCCGTCAAGCAATCAACTTTGCCTTTAACCG
TCACTCATATGCTGCACAGCTCAACGGTGAAGATGGTGCGGATAAGATTATTCGTAACAGCCTAGTTCCAGATAACTTTG
TCCAATCTGGTGGTAAAAACTTTGGTGATATTGCTCAAGCAGAATTGGTCAACTATGGAGACCAATGGAAAGGTGTTGAA
CTTGTAGACGGAAAAGATACTATCTATAATCCTGATAAAGCCAAAGCTTCATTTGAAAAAGCTAAGAAAGAATTGGAAGC
AAAAGGTGTAACCTTCCCAATTCACTTGGATGTCCCAGTTGAGCAAACAGATACAATTGCAGTTCAACAAAGCAATTCCT
TTAAACAATCAATCGAGTCAACTCTTGGTTCTGAAAATGTCGTTATCGATGTTCTTCAGATGACTGATAACGAGAAGGAA
AGTATTACATCTCAAGCACGTGTTCCTGCTCAGAAAGACTATGACTTGAATAGCACTGGTTGGGCTCCAAGCTATCAAGA
CCCAGCAAGTTATCTAAATATCATGGATCCTAAAACTGGTTCTGCTATGAAACACCTTGGTATTACGAAAGGTAAAGACA
AGGAAGTAGTAGCTCAACTTGGTTTAGATGAATATAAGAAACTCTTGGATGATGCAGTTTCTGAGACAAATGACTTGGAC
AAGAGATATGAAAAATATGCCAAAGCTCAAGCATGGCTTACTGATAGTTCTCTCTTGATGCCGACAGCTTCGTCAGGAGG
CTCACCAGTTGTCAGCAACGTTGTTCCATTCTCTAAACCATACTCACAAGTAGGTATCAAGGGTGATCCATATATCTTCA
AGGGCATGAAATTGCAAAAAGAGATTGTAACGGCTAAAGAATATCAAGCAGCTCTTGAAAAATGGCAAAAAGAGAAATTG
GAATCAAACAATAAATACCAAAAAGAACTAGAAAGTCATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5W2D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.576

100

0.53
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525
  amiA3 Streptococcus thermophilus LMG 18311

51.97

100

0.524

Multiple sequence alignment