Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GOM47_RS08305 Genome accession   NZ_CP046524
Coordinates   1655104..1656873 (-) Length   589 a.a.
NCBI ID   WP_235080505.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650104..1661873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08275 (GOM47_08275) - 1650704..1651069 (-) 366 WP_000216441.1 Asp23/Gls24 family envelope stress response protein -
  GOM47_RS08280 (GOM47_08280) rpmB 1651222..1651410 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  GOM47_RS08285 (GOM47_08285) - 1651517..1652191 (-) 675 WP_036758119.1 LiaF transmembrane domain-containing protein -
  GOM47_RS08290 (GOM47_08290) - 1652196..1652642 (-) 447 WP_000776591.1 LytTR family DNA-binding domain-containing protein -
  GOM47_RS08295 (GOM47_08295) - 1652756..1653259 (-) 504 WP_235080503.1 phosphatase PAP2 family protein -
  GOM47_RS08300 (GOM47_08300) rcrQ 1653354..1655114 (-) 1761 WP_235080504.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS08305 (GOM47_08305) rcrP 1655104..1656873 (-) 1770 WP_235080505.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS08310 (GOM47_08310) - 1656857..1657318 (-) 462 WP_235080506.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM47_RS08315 (GOM47_08315) - 1657496..1658212 (-) 717 WP_000532893.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM47_RS08320 (GOM47_08320) - 1658309..1659679 (-) 1371 WP_235080507.1 MATE family efflux transporter -
  GOM47_RS08325 (GOM47_08325) - 1659789..1660343 (+) 555 WP_235080508.1 GNAT family N-acetyltransferase -
  GOM47_RS08330 (GOM47_08330) recA 1660400..1661551 (-) 1152 WP_235080509.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65438.76 Da        Isoelectric Point: 5.4075

>NTDB_id=405010 GOM47_RS08305 WP_235080505.1 1655104..1656873(-) (rcrP) [Streptococcus oralis strain SOT]
MKKLAKRITGKEWGMIVLTILFTCFSVYLELEVPTYISQITELLGTSGTQLDALWSPAAKMIGLSLLAFFSSVMVGFFAA
RVAASYTTHLRTDVFHQVLDFSQTEIKRFSIPSLLTRTTNDITQIQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVVAVIVNVLMTTILMTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDEKFEAANDEVTRLNLFVNRLMAI
MNPIMMAISSGLSLAIYWIGAYIINDASLAERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIENPSHAQTADPSVQGQVEFRDVTFRYSKNSEAVVEHVTFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DEVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSKETPLSEAAMWQALELAQSKSFIEDKEVGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQELAEKTQSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=405010 GOM47_RS08305 WP_235080505.1 1655104..1656873(-) (rcrP) [Streptococcus oralis strain SOT]
ATGAAGAAACTCGCTAAACGTATTACAGGAAAAGAGTGGGGGATGATTGTCCTTACGATTCTTTTCACTTGTTTCTCGGT
CTATCTCGAGTTAGAGGTACCGACCTACATTTCACAAATTACAGAGTTACTTGGAACGTCTGGAACGCAGTTGGATGCAC
TCTGGTCACCAGCTGCGAAGATGATTGGTTTGTCTTTATTGGCTTTCTTTTCATCTGTTATGGTTGGTTTCTTTGCCGCT
CGCGTTGCAGCATCCTATACAACCCATCTACGCACTGATGTATTTCATCAGGTTTTGGATTTTTCGCAGACAGAGATCAA
ACGTTTTTCAATCCCAAGTCTTTTGACTCGGACGACCAATGATATCACTCAGATTCAGATGCTCTTTACTATGGGCTTAC
AGGTAGTGACTCGTGGGCCTATCATGGCCATCTGGGCCATTGGAAAAATCCTTGGGAAGTCGGAATACTGGCTCTGGGCA
GTGGTTGTGGCTGTTATTGTGAATGTCTTGATGACCACTATTCTCATGACTCTGGCCTTTCCAAAACAATCTGTCATCCA
AAAATTGACAGATAAACTCAATAGCATCACTCGTGAAAGCTTGACTGGGATTCGAGTTGTTCGTGCATACAATGCTGAGG
ATTACCAAGATGAAAAATTTGAAGCAGCCAATGATGAGGTGACACGTCTCAATCTCTTTGTCAATCGATTGATGGCGATT
ATGAACCCGATCATGATGGCCATTTCAAGTGGACTAAGTTTAGCCATTTACTGGATTGGTGCCTATATCATCAACGACGC
AAGTTTGGCAGAACGTTTGCCACTCTTTAGTGATATGGTGGTCTTCATGTCCTATGCTATGCAGGTCGTGATGGGCTTCC
TTCTCATGGGAGCACTCTTTATCGTTCTTCCTCGTACCTTGGTTTCGGCAGGGCGTATCAATCAAGTATTGGATCTGCAT
TCTTCTATTGAAAATCCTAGTCATGCACAGACAGCGGATCCTTCAGTTCAAGGACAAGTGGAATTCCGTGATGTAACTTT
CCGCTACTCTAAAAACTCTGAAGCAGTCGTGGAACATGTCACTTTCAAAGCAGAAGCGGGTCAAACCGTAGCCTTCATCG
GATCGACTGGATCAGGTAAGTCTACGCTTGTCAACCTCTTGCCACGTTTTTACGATGTTTCTGATGGAGAAATCCTAGTG
GACGAAGTTAATGTTCAAGACTATGACTTGGAAGATTTGCGCAACAAGGTTGGTTATATTCCTCAAAAAGCTGTGCTCTT
TTCTGGAGATGTCAAGGGGAACTTGGACTTTGGCAAAAGCAAAGAAACTCCTCTAAGCGAGGCTGCTATGTGGCAAGCCC
TTGAATTGGCCCAGTCTAAAAGCTTCATAGAGGATAAGGAAGTAGGACTTGCATCAGAAGTAGCCCAAGGTGGAACCAAC
TTCTCAGGAGGTCAAAGACAGCGTTTGGCCATTGCGCGTGCCTTGGCTCGTAAACCAGAGATTCTCATTTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACGGATCGTATCTTACGCCAAGAGCTAGCTGAGAAAACACAATCCATGACCAAGCTCA
TCGTAGCGCAGCGGATTTCTACCATTATGGATGCTGACCTGATCTTAGTCTTGGATCAAGGAAAAGTCGTGGGACAAGGC
ACCCATAAGGAACTTCTAGCTACCAACGAAGTCTACCAAGAAATTGCCTACTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

64.892

100

0.662

Multiple sequence alignment