Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM47_RS08300 Genome accession   NZ_CP046524
Coordinates   1653354..1655114 (-) Length   586 a.a.
NCBI ID   WP_235080504.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648354..1660114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08260 (GOM47_08260) - 1648512..1648706 (-) 195 WP_000709170.1 hypothetical protein -
  GOM47_RS08265 (GOM47_08265) - 1648703..1648909 (-) 207 WP_000390701.1 hypothetical protein -
  GOM47_RS08270 (GOM47_08270) - 1649034..1650701 (-) 1668 WP_235080502.1 DAK2 domain-containing protein -
  GOM47_RS08275 (GOM47_08275) - 1650704..1651069 (-) 366 WP_000216441.1 Asp23/Gls24 family envelope stress response protein -
  GOM47_RS08280 (GOM47_08280) rpmB 1651222..1651410 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  GOM47_RS08285 (GOM47_08285) - 1651517..1652191 (-) 675 WP_036758119.1 LiaF transmembrane domain-containing protein -
  GOM47_RS08290 (GOM47_08290) - 1652196..1652642 (-) 447 WP_000776591.1 LytTR family DNA-binding domain-containing protein -
  GOM47_RS08295 (GOM47_08295) - 1652756..1653259 (-) 504 WP_235080503.1 phosphatase PAP2 family protein -
  GOM47_RS08300 (GOM47_08300) rcrQ 1653354..1655114 (-) 1761 WP_235080504.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS08305 (GOM47_08305) rcrP 1655104..1656873 (-) 1770 WP_235080505.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS08310 (GOM47_08310) - 1656857..1657318 (-) 462 WP_235080506.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM47_RS08315 (GOM47_08315) - 1657496..1658212 (-) 717 WP_000532893.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM47_RS08320 (GOM47_08320) - 1658309..1659679 (-) 1371 WP_235080507.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64663.38 Da        Isoelectric Point: 5.3282

>NTDB_id=405009 GOM47_RS08300 WP_235080504.1 1653354..1655114(-) (rcrQ) [Streptococcus oralis strain SOT]
MENKKMSFWKYYKPFLAGLQIPLLVAVVAAVCSSIITVYGPTKIKEITNLISDGLMTGIDLEAVSSIASFLVILYVLGAI
LNYTQAYIFSSSIQHFSKRLRTAIAEKINRLPLGYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVISASFLLIAVLVTM
FSMNWILALVTVVSTFVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTSKARFAGLNQNLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVIIVGAALALEGHITIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMGRVFE
FLGEAEMQDESHKERQLTGMRGEVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKDMKRSEVHDAFSMVLQDTWLFEGTIRENLIYNQTGISDERMMEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=405009 GOM47_RS08300 WP_235080504.1 1653354..1655114(-) (rcrQ) [Streptococcus oralis strain SOT]
ATGGAAAATAAGAAAATGTCTTTTTGGAAATATTATAAACCTTTTCTAGCAGGTCTCCAAATTCCCCTACTAGTAGCGGT
TGTAGCAGCTGTATGTTCAAGCATCATCACTGTTTATGGACCAACCAAGATTAAGGAAATTACCAACTTGATTTCAGATG
GTTTGATGACAGGAATTGATTTAGAGGCTGTTTCAAGTATTGCTAGCTTTTTAGTGATTCTCTATGTACTTGGTGCTATC
CTTAACTATACACAGGCCTATATCTTTTCATCGAGCATTCAGCATTTTTCAAAACGCTTGCGGACAGCAATCGCTGAAAA
AATCAATCGTTTGCCACTTGGCTATTTTGACCGTCATTCACAAGGAGACACCCTTTCGCGCGTGACCAATGATGTGGATA
CAGCGGCGCAATCTCTCAACCAAAGTCTCGGAACAGTTATCTCAGCCAGCTTCTTGTTGATTGCTGTTTTGGTGACCATG
TTTAGTATGAACTGGATTTTAGCTCTGGTAACGGTTGTTTCTACGTTTGTTGGTTTTGCGGCGGTTTCAGTAATTATGGC
CAAGTCACAGGGTTATTTTAAAGCCCAACAAAATAATCTAGCAGCCGTCAATGGTTATGTGGAAGAGATGTACTCTGGCC
ACAATGTAGTGACCAGCTACAACGCAGTGGACACCTCCAAAGCGAGATTTGCAGGTTTAAACCAAAACTTGCACGACAGC
ATCTGGAAATCTCAGTTTATCTCTGGTATCATGATGCCAGCCATGTTCTTTGTTGGGAATTTTAGCTATGTTTTGGTCAT
CATTGTTGGGGCCGCGCTTGCTCTAGAAGGGCATATCACTATAGGGATTATTGTAGCCTTTATGGTTTACGTACGGACCT
TCTCCCAACCCCTGTCACAGATTGCCCAAGGGATTACGAGCTTACAACAAGCGAGTGCAGCCATGGGACGTGTCTTTGAA
TTTCTAGGTGAAGCTGAGATGCAGGATGAATCCCATAAGGAAAGACAATTGACTGGCATGAGAGGAGAAGTGGTCTTTGA
TCGCGTATCCTTTGGTTATACACCAGAACGCACCATCATCCATGACTTTTCTGCGACAGCTCATGCAGGCCAGAAGGTCG
CTATCGTTGGGCCTACTGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATCCGTATCGATGGTGTCGATACCAAGGATATGAAGCGCTCAGAAGTACACGATGCCTTTTCAATGGTCTTGCAAGATAC
TTGGCTCTTTGAAGGAACGATTCGAGAAAATCTCATCTACAATCAAACGGGCATCAGTGATGAACGAATGATGGAAGCAA
GCAAGGCTGTGGGAATCCACCACTTTATCATGACTTTGCCAGATGGCTACGATACTGTTTTGGATGACACCGTGACCTTG
TCTGTTGGACAAAAACAGCTCTTGACCATTGCTCGTGCCCTTCTCAAGGATGCACCGCTCTTGATTTTGGATGAAGCGAC
ATCCTCAGTCGACACACGTACAGAGGAATTGATTCAGAAAGCCATGGACCGTTTGATGGAGGGTAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACTATTCGTAATGCCGACTTGATTCTTGTCATGAAAGATGGTAATATCATCGAACAAGGCAAC
CATGAGGAGCTGATGGCGCAAGGTGGCTTCTACGCCGACTTGTACAATAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.952

99.659

0.667

Multiple sequence alignment