Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GOM48_RS07820 Genome accession   NZ_CP046523
Coordinates   1550557..1551288 (-) Length   243 a.a.
NCBI ID   WP_235097051.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545557..1556288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS07790 (GOM48_07730) blpC 1546101..1546256 (+) 156 WP_235097045.1 quorum-sensing system pheromone BlpC -
  GOM48_RS07795 (GOM48_07735) - 1546299..1547639 (-) 1341 WP_235097046.1 sensor histidine kinase -
  GOM48_RS07800 (GOM48_07740) comE/blpR 1547653..1548390 (-) 738 WP_235097047.1 response regulator transcription factor Regulator
  GOM48_RS07805 (GOM48_07745) - 1548395..1548733 (-) 339 WP_235097048.1 LytTR family DNA-binding domain-containing protein -
  GOM48_RS07810 (GOM48_07750) - 1549013..1549342 (+) 330 WP_235097049.1 helicase BlpT -
  GOM48_RS07815 (GOM48_07755) - 1549511..1550560 (-) 1050 WP_235097050.1 ABC transporter permease -
  GOM48_RS07820 (GOM48_07760) pptA 1550557..1551288 (-) 732 WP_235097051.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS07825 (GOM48_07765) - 1551356..1551766 (+) 411 WP_235097052.1 HIT family protein -
  GOM48_RS07830 (GOM48_07770) - 1551776..1552054 (+) 279 WP_235097053.1 hypothetical protein -
  GOM48_RS07835 (GOM48_07775) - 1552118..1552777 (+) 660 WP_235097054.1 hypothetical protein -
  GOM48_RS07840 (GOM48_07780) dnaJ 1552857..1553993 (-) 1137 WP_235097055.1 molecular chaperone DnaJ -
  GOM48_RS07845 (GOM48_07785) - 1554315..1554635 (-) 321 WP_235097056.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27230.66 Da        Isoelectric Point: 4.7211

>NTDB_id=404933 GOM48_RS07820 WP_235097051.1 1550557..1551288(-) (pptA) [Streptococcus oralis strain SOD]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKINGLTLREDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKAAFERVESLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDTFVILHKGEVRAQGNLQQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=404933 GOM48_RS07820 WP_235097051.1 1550557..1551288(-) (pptA) [Streptococcus oralis strain SOD]
ATGTTAGAAATTAAAAACCTGACAGGAGGCTATGTTCACGTCCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAAAGTGG
GCAGTTAGTCGGTTTGATTGGTCTCAACGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTTTTGACACCTT
ATAGTGGGGAAATCAAGATTAATGGTCTAACCCTGCGAGAAGATGCGACCAATTACCGCAAGCAGATTGGCTACATCCCA
GAAACGCCTAGCTTGTATGAGGAATTGACTCTTAGAGAGCATATCGAGACGGTGGCTATGGCCTATGGTATTGAGCAAAA
AGCGGCTTTTGAGCGAGTAGAATCTTTGTTAAAAATGTTTCGTTTGGATCAAAAATTAGATTGGTTTCCTGTGCATTTTT
CCAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTCGTAGATCCGAGCCTTTTCATCGTTGATGAGCCTTTT
CTTGGTCTCGATCCCTTGGCGATTGCCGACTTGATTCAGCTTCTAGAAGTAGAAAAGCAAAAAGGCAAGTCCATCCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGACACCTTTGTCATTCTCCACAAGGGAGAGGTGCGGGCTCAGG
GGAACCTCCAGCAACTCCGCGAAGCCTTTGACATGCCTGAAGCGAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment