Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GOM48_RS03070 Genome accession   NZ_CP046523
Coordinates   617915..619147 (+) Length   410 a.a.
NCBI ID   WP_235098301.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 612915..624147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS03035 (GOM48_03015) galE 613587..614606 (+) 1020 WP_235098291.1 UDP-glucose 4-epimerase GalE -
  GOM48_RS03040 (GOM48_03020) - 614590..615573 (+) 984 WP_235098292.1 glycosyltransferase family 2 protein -
  GOM48_RS03045 (GOM48_03025) - 615649..615852 (-) 204 WP_002874767.1 ferredoxin -
  GOM48_RS03050 (GOM48_03030) - 615898..616404 (+) 507 WP_235098294.1 SAG1386/EF1546 family surface-associated protein -
  GOM48_RS03055 (GOM48_03035) cmk 616414..617088 (+) 675 WP_235098296.1 (d)CMP kinase -
  GOM48_RS03060 (GOM48_03040) - 617207..617713 (+) 507 WP_235098298.1 dihydrofolate reductase -
  GOM48_RS03065 (GOM48_03045) - 617713..617883 (+) 171 WP_000442255.1 hypothetical protein -
  GOM48_RS03070 (GOM48_03050) clpX 617915..619147 (+) 1233 WP_235098301.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GOM48_RS03075 (GOM48_03055) yihA 619156..619743 (+) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GOM48_RS03080 (GOM48_03060) - 619753..620133 (+) 381 WP_235098303.1 RidA family protein -
  GOM48_RS03085 (GOM48_03065) rapZ 620185..621075 (+) 891 WP_235098306.1 RNase adapter RapZ -
  GOM48_RS03090 (GOM48_03070) - 621072..622049 (+) 978 WP_001231058.1 YvcK family protein -
  GOM48_RS03095 (GOM48_03075) whiA 622046..622957 (+) 912 WP_235098308.1 DNA-binding protein WhiA -
  GOM48_RS03100 (GOM48_03080) - 622989..623957 (-) 969 WP_000081039.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45728.30 Da        Isoelectric Point: 4.4609

>NTDB_id=404912 GOM48_RS03070 WP_235098301.1 617915..619147(+) (clpX) [Streptococcus oralis strain SOD]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFEDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=404912 GOM48_RS03070 WP_235098301.1 617915..619147(+) (clpX) [Streptococcus oralis strain SOD]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTTAAAAAAATAAT
CGCTGGAAACAACGCCTTTATCTGTAATGAGTGTGTGGAGTTAGCCCAGGAAATCATTCGTGAAGAGTTAGCTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATCGAACTCTTAAACATCTTGAACCACTATGTGATTGGTCAAGATCGT
GCTAAACGTGCCTTGGCAGTAGCTGTATATAATCACTACAAACGCATCAATTTCCATGACACTCGTGAAGAGTCAGAAGA
TGTGGATTTGCAAAAATCAAACATTTTGATGATTGGTCCAACTGGTTCAGGGAAGACTTTCCTTGCTCAAACCCTTGCTA
GAAGTTTGAATGTACCATTTGCTATTGCTGATGCAACGGCTCTTACTGAGGCGGGTTATGTAGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCAGCTGACTTTAACATCGAACGTGCAGAACGTGGAATTATCTATGTGGATGAGATTGA
CAAGATTGCTAAGAAGAGCGAAAATGTTTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTCCTCAAGA
TTATCGAAGGAACTGTAGCTAGCGTCCCTCCTCAAGGCGGACGTAAACATCCACAACAAGAAATGATTCAAGTGGATACC
AAGAATATCCTCTTCATCGTGGGTGGTGCCTTCGATGGCATTGAAGAAATTGTCAAACAGCGTTTGGGAGAAAAAGTCAT
TGGTTTTGGACAAAATAACAAGGCTATTGACGAAAACAGTTCTTACATGCAAGAGATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATTCCTGAATTAATTGGACGCTTGCCTGTCTTTGCAGCCTTGGAGCAGTTGACTGTAGATGATTTGGTTCGC
ATCTTGAAGGAACCAAGAAATGCCTTGGTTAAACAATATCAGACCTTACTTTCTTATGATGATGTTGAGTTGGAATTTGA
AGATGAAGCCCTTCAAGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGGTCTATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTTGAT
GGAACGGAAAAACCCATTCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment