Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IXO597_RS16500 Genome accession   NZ_CP046495
Coordinates   3556671..3558122 (+) Length   483 a.a.
NCBI ID   WP_178383148.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain IXO597     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3551817..3562871 3556671..3558122 within 0


Gene organization within MGE regions


Location: 3551817..3562871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO597_RS16480 (IXO597_016635) - 3551817..3552311 (-) 495 WP_075243396.1 hypothetical protein -
  IXO597_RS16485 (IXO597_016640) sucD 3552484..3553359 (-) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  IXO597_RS16490 (IXO597_016645) sucC 3553384..3554553 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  IXO597_RS16495 (IXO597_016650) - 3554787..3556400 (+) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  IXO597_RS16500 (IXO597_016655) pilR 3556671..3558122 (+) 1452 WP_178383148.1 sigma-54 dependent transcriptional regulator Regulator
  IXO597_RS16505 (IXO597_016660) - 3558195..3558401 (+) 207 WP_027703281.1 YhfG family protein -
  IXO597_RS16510 (IXO597_016665) - 3558463..3558624 (+) 162 WP_153296778.1 hypothetical protein -
  IXO597_RS16515 (IXO597_016670) - 3558748..3558972 (+) 225 WP_336260020.1 cell filamentation protein Fic -
  IXO597_RS16520 (IXO597_016675) pilB 3558981..3560714 (-) 1734 WP_075243394.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IXO597_RS16525 (IXO597_016680) - 3560749..3562275 (-) 1527 WP_075243393.1 hypothetical protein -
  IXO597_RS16530 (IXO597_016685) - 3562245..3562814 (-) 570 WP_229001934.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52454.20 Da        Isoelectric Point: 6.9755

>NTDB_id=404730 IXO597_RS16500 WP_178383148.1 3556671..3558122(+) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO597]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKNLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGNAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=404730 IXO597_RS16500 WP_178383148.1 3556671..3558122(+) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO597]
TTGCGCCGCGCCCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCGGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATTCTTGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.203

95.652

0.605
  pilR Acinetobacter baumannii strain A118

48.485

95.652

0.464

Multiple sequence alignment