Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   VY92_RS09140 Genome accession   NZ_CP058307
Coordinates   1884243..1884962 (+) Length   239 a.a.
NCBI ID   WP_035688438.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879243..1889962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS09105 (VY92_009110) tolR 1879726..1880148 (+) 423 WP_035688444.1 colicin uptake protein TolR -
  VY92_RS09110 (VY92_009115) tolA 1880165..1881379 (+) 1215 WP_035688442.1 cell envelope integrity protein TolA -
  VY92_RS09115 (VY92_009120) tolB 1881431..1882720 (+) 1290 WP_233570698.1 Tol-Pal system beta propeller repeat protein TolB -
  VY92_RS09120 (VY92_009125) pal 1882731..1883183 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  VY92_RS09135 (VY92_009140) comN 1883721..1884242 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VY92_RS09140 (VY92_009145) comO 1884243..1884962 (+) 720 WP_035688438.1 type II secretion system protein J Machinery gene
  VY92_RS09145 (VY92_009150) - 1884964..1885629 (+) 666 WP_051128113.1 DUF2572 family protein -
  VY92_RS09150 (VY92_009155) comQ 1885610..1885915 (+) 306 WP_035688436.1 DUF5374 domain-containing protein Machinery gene
  VY92_RS09155 (VY92_009160) recC 1885927..1889331 (+) 3405 WP_035688434.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27777.03 Da        Isoelectric Point: 8.2091

>NTDB_id=404702 VY92_RS09140 WP_035688438.1 1884243..1884962(+) (comO) [Avibacterium paragallinarum strain AVPG2015]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEIRIQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQASGEPLGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=404702 VY92_RS09140 WP_035688438.1 1884243..1884962(+) (comO) [Avibacterium paragallinarum strain AVPG2015]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTATCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATACGAATTCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCAGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGCTTCAGGGGAGCCACTGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGTCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.479

99.582

0.473