Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   VY92_RS09150 Genome accession   NZ_CP058307
Coordinates   1885610..1885915 (+) Length   101 a.a.
NCBI ID   WP_035688436.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1880610..1890915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS09115 (VY92_009120) tolB 1881431..1882720 (+) 1290 WP_233570698.1 Tol-Pal system beta propeller repeat protein TolB -
  VY92_RS09120 (VY92_009125) pal 1882731..1883183 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  VY92_RS09135 (VY92_009140) comN 1883721..1884242 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VY92_RS09140 (VY92_009145) comO 1884243..1884962 (+) 720 WP_035688438.1 type II secretion system protein J Machinery gene
  VY92_RS09145 (VY92_009150) - 1884964..1885629 (+) 666 WP_051128113.1 DUF2572 family protein -
  VY92_RS09150 (VY92_009155) comQ 1885610..1885915 (+) 306 WP_035688436.1 DUF5374 domain-containing protein Machinery gene
  VY92_RS09155 (VY92_009160) recC 1885927..1889331 (+) 3405 WP_035688434.1 exodeoxyribonuclease V subunit gamma -
  VY92_RS09160 (VY92_009165) - 1889369..1890187 (-) 819 WP_035688432.1 pyridoxal phosphatase -
  VY92_RS09165 (VY92_009170) araD 1890215..1890910 (-) 696 WP_035688430.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11846.74 Da        Isoelectric Point: 9.7195

>NTDB_id=404703 VY92_RS09150 WP_035688436.1 1885610..1885915(+) (comQ) [Avibacterium paragallinarum strain AVPG2015]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMELDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=404703 VY92_RS09150 WP_035688436.1 1885610..1885915(+) (comQ) [Avibacterium paragallinarum strain AVPG2015]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTCTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGAGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

44.318

87.129

0.386

Multiple sequence alignment