Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GFX43_RS19385 Genome accession   NZ_CP046448
Coordinates   3766625..3767575 (-) Length   316 a.a.
NCBI ID   WP_015382768.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3761625..3772575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS19365 (GFX43_019365) cdaE 3762493..3763911 (+) 1419 WP_015382772.1 MDR family MFS transporter -
  GFX43_RS19370 (GFX43_019370) yclQ 3763958..3764911 (-) 954 WP_015482797.1 petrobactin ABC transporter substrate-binding protein YclQ -
  GFX43_RS19375 (GFX43_019375) yclP 3764933..3765691 (-) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  GFX43_RS19380 (GFX43_019380) yclO 3765685..3766632 (-) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -
  GFX43_RS19385 (GFX43_019385) ceuB 3766625..3767575 (-) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  GFX43_RS19390 (GFX43_019390) thrD 3767960..3769324 (+) 1365 WP_015382767.1 aspartate kinase -
  GFX43_RS19395 (GFX43_019395) yczN 3769477..3769590 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  GFX43_RS19400 (GFX43_019400) yczM 3769672..3769761 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  GFX43_RS19405 (GFX43_019405) phrC 3769861..3769983 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  GFX43_RS19410 (GFX43_019410) rapC 3769967..3771115 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=404430 GFX43_RS19385 WP_015382768.1 3766625..3767575(-) (ceuB) [Bacillus subtilis strain ZD01]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLIAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=404430 GFX43_RS19385 WP_015382768.1 3766625..3767575(-) (ceuB) [Bacillus subtilis strain ZD01]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTTTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAACAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCC
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GATTGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTAGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCCCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528

Multiple sequence alignment