Detailed information NTG0404420

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: GFX43_RS15450
• Genome accession: NZ_CP046448
• Coordinates: 3014787..3015740 (-)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain ZD01
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 3009787..3020740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFX43_RS15420 (GFX43_015420)	appD	3009908..3010894 (-)	987	WP_015383344.1	oligopeptide ABC transporter ATP-binding protein AppD	-
GFX43_RS15425 (GFX43_015425)	yjaZ	3011087..3011872 (-)	786	WP_015383343.1	DUF2268 domain-containing protein	-
GFX43_RS15430 (GFX43_015430)	fabF	3011948..3013189 (-)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
GFX43_RS15435 (GFX43_015435)	fabH	3013212..3014150 (-)	939	WP_015483083.1	beta-ketoacyl-ACP synthase III	-
GFX43_RS15440 (GFX43_015440)	yjzB	3014315..3014551 (+)	237	WP_015383342.1	spore coat protein YjzB	-
GFX43_RS15445 (GFX43_015445)	comZ	3014581..3014772 (-)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
GFX43_RS15450 (GFX43_015450)	med	3014787..3015740 (-)	954	WP_014476425.1	transcriptional regulator Med	Regulator
GFX43_RS15455 (GFX43_015455)	-	3015830..3016387 (-)	558	WP_015383340.1	hypothetical protein	-
GFX43_RS15460 (GFX43_015460)	-	3016469..3017203 (-)	735	WP_015483082.1	hypothetical protein	-
GFX43_RS15465 (GFX43_015465)	yjzD	3017454..3017639 (+)	186	WP_003245236.1	DUF2929 domain-containing protein	-
GFX43_RS15470 (GFX43_015470)	yjzC	3017685..3017864 (-)	180	WP_003245356.1	YjzC family protein	-
GFX43_RS15475 (GFX43_015475)	argF	3017950..3018909 (-)	960	WP_015383338.1	ornithine carbamoyltransferase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=404420 GFX43_RS15450 WP_014476425.1 3014787..3015740(-) (med) [Bacillus subtilis strain ZD01]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=404420 GFX43_RS15450 WP_014476425.1 3014787..3015740(-) (med) [Bacillus subtilis strain ZD01]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997