Detailed information NTG0404392

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: GFX43_RS08950
• Genome accession: NZ_CP046448
• Coordinates: 1731600..1733930 (+)
• Length: 776 a.a.
• NCBI ID: WP_041517945.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain ZD01
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1726600..1738930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFX43_RS08910 (GFX43_008910)	yhbY	1726837..1727127 (+)	291	WP_003226133.1	ribosome assembly RNA-binding protein YhbY	-
GFX43_RS08915 (GFX43_008915)	nadD	1727139..1727708 (+)	570	WP_004398676.1	nicotinate-nucleotide adenylyltransferase	-
GFX43_RS08920 (GFX43_008920)	yqeK	1727698..1728258 (+)	561	WP_015483448.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
GFX43_RS08925 (GFX43_008925)	rsfS	1728276..1728632 (+)	357	WP_014480315.1	ribosome silencing factor	-
GFX43_RS08930 (GFX43_008930)	yqeM	1728629..1729372 (+)	744	WP_015384134.1	class I SAM-dependent methyltransferase	-
GFX43_RS08935 (GFX43_008935)	comER	1729438..1730259 (-)	822	WP_004398597.1	late competence protein ComER	-
GFX43_RS08940 (GFX43_008940)	comEA	1730343..1730960 (+)	618	WP_015384132.1	competence protein ComEA	Machinery gene
GFX43_RS08945 (GFX43_008945)	comEB	1731027..1731596 (+)	570	WP_003229978.1	ComE operon protein 2	-
GFX43_RS08950 (GFX43_008950)	comEC	1731600..1733930 (+)	2331	WP_041517945.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GFX43_RS08955 (GFX43_008955)	yqzM	1733970..1734104 (-)	135	WP_003229983.1	YqzM family protein	-
GFX43_RS08960 (GFX43_008960)	-	1734145..1734294 (+)	150	WP_003229985.1	hypothetical protein	-
GFX43_RS08965 (GFX43_008965)	holA	1734334..1735377 (+)	1044	WP_015384130.1	DNA polymerase III subunit delta	-
GFX43_RS08970 (GFX43_008970)	rpsT	1735392..1735658 (-)	267	WP_003229989.1	30S ribosomal protein S20	-
GFX43_RS08975 (GFX43_008975)	gpr	1735862..1736968 (+)	1107	WP_014480309.1	GPR endopeptidase	-
GFX43_RS08980 (GFX43_008980)	spoIIP	1737031..1738236 (+)	1206	WP_015384129.1	spore autolysin SpoIIP	-
GFX43_RS08985 (GFX43_008985)	yqxA	1738253..1738591 (+)	339	WP_014477382.1	YqxA family protein	-

Sequence

Protein

• Length: 776 a.a.
• Molecular weight: 86647.97 Da
• Isoelectric Point: 6.8607

>NTDB_id=404392 GFX43_RS08950 WP_041517945.1 1731600..1733930(+) (comEC) [Bacillus subtilis strain ZD01]
MRNSRLLLPMAAASATAGITAAAYFPAIFLFILFLLIILIKTRHAFLIIVCFFSFILFFVLYAVTDSQNVSSYRQGTYQF
KAVIDNIPKIDGDRMSMMVETPDKEKWAAAYRIQSAGEKEQLLYIEPGMSCELTGTLEEPNHATVPGAFDYNEYLYRQHI
HWNYSVTSIQNCSEPENFKYKVLSLRKHIISFTNSLLPPDSAGIVQALTVGDRFYVEDEVLTAYQKLGVVHLLAISGLHV
GILTAGLFYIMIRLGITREKASILLLLFLPLYVMLTGAASSVLRAALMSGVYLAGSLVKWRVHSATAICLSYIVLLLFNP
YHLFEAGFQLSFAVSFSLILSSSIFQQVKTSLGQLTIVSLIAQLGSLPILLYHFHKFSIISVPMNMLMVPFYTFCILPGA
VAGVLLLSLSASFGRLFFSWFDLLISWTNRLITNIADVDVFTIMIAHPAPVLLFLFTVTILLLLMAIEKRSLSQLMVTGG
ICCTVLFLLFIYPCLSSEGEVDMIDIGQGDSMFVGAPHQRGRVLIDTGGTLSYSSEPWREKQHPFSLGEKVLIPFLTAKG
IKQLDALILTHADQDHIGEAETLLKYHKVKRLVIPKGFVSEPKDEKVLQTAREEGVTIEEVKRGDVLQIKDLQFHVLSPE
APDPASKNNSSLVLWMETGGMSWILTGDLEKEGEQEVMDVFPNIKADVLKVGHHGSKGSTGEEFTQQLQPETAIISAGKN
NRYHHPHQEVLQLLQRHSIRVLRTDQNGTIQYRYKNRGGTFSVYPPYDTSDITETN

Nucleotide

• Length: 2331 bp

>NTDB_id=404392 GFX43_RS08950 WP_041517945.1 1731600..1733930(+) (comEC) [Bacillus subtilis strain ZD01]
ATGCGTAATTCGCGATTGTTATTGCCTATGGCGGCAGCTTCGGCAACGGCTGGAATTACTGCCGCCGCTTATTTCCCCGC
TATTTTTCTTTTCATCCTCTTTCTCCTCATCATTTTAATCAAAACGAGGCACGCTTTTCTTATTATTGTTTGTTTCTTCT
CTTTTATATTGTTTTTTGTACTGTATGCAGTCACAGATTCTCAGAATGTCTCTTCCTATCGGCAGGGAACTTATCAATTC
AAGGCAGTGATTGACAATATTCCTAAAATTGACGGCGACCGTATGTCTATGATGGTTGAGACACCTGATAAGGAAAAATG
GGCTGCTGCGTATCGCATTCAGTCTGCTGGTGAAAAAGAACAGCTGTTATACATAGAACCAGGAATGTCATGTGAGTTGA
CTGGTACATTGGAAGAACCGAATCACGCAACTGTGCCGGGTGCATTTGATTATAACGAGTATCTTTATCGGCAGCATATT
CATTGGAACTACTCTGTCACGTCTATCCAAAACTGCAGCGAACCTGAAAATTTCAAGTACAAGGTGCTCAGCTTGAGAAA
ACATATCATATCATTCACAAACAGCCTTCTGCCTCCTGATTCGGCAGGGATTGTACAGGCACTTACAGTTGGTGACAGAT
TTTATGTGGAAGATGAAGTGCTTACTGCGTATCAAAAGCTTGGTGTTGTCCATCTCTTGGCAATATCAGGGCTCCACGTG
GGGATTTTGACAGCAGGTTTGTTTTATATCATGATACGCCTTGGTATAACAAGAGAAAAGGCGTCAATTCTGTTGCTGTT
ATTTCTGCCGCTCTATGTGATGTTGACCGGCGCTGCTTCTTCAGTGCTACGCGCCGCTCTCATGTCGGGTGTTTACTTAG
CTGGAAGCCTTGTCAAATGGCGTGTCCACTCTGCAACTGCAATTTGCCTTTCATACATCGTCCTTCTGCTCTTCAATCCT
TATCATCTCTTTGAAGCCGGTTTTCAGCTATCGTTCGCCGTCAGTTTTTCTTTAATTCTATCCTCTTCTATTTTTCAGCA
GGTTAAAACCTCCTTGGGGCAGCTGACAATTGTATCACTCATCGCTCAGCTGGGCTCGCTTCCGATTCTCCTATATCATT
TTCATAAGTTTTCTATCATCAGCGTACCGATGAATATGTTGATGGTACCATTTTATACCTTCTGTATTTTGCCGGGAGCT
GTAGCAGGTGTTCTTCTATTAAGTCTTTCCGCTTCGTTTGGGAGATTGTTTTTCAGCTGGTTTGATTTATTGATAAGCTG
GACCAATAGGCTAATCACAAACATTGCTGATGTTGATGTATTCACGATTATGATCGCACATCCTGCACCTGTTTTGCTTT
TTTTATTCACGGTCACGATCCTCCTATTGCTTATGGCGATTGAAAAACGCTCCTTGTCGCAGTTGATGGTAACTGGAGGC
ATTTGCTGCACGGTGCTGTTTCTGCTCTTTATATATCCGTGTCTTAGTTCCGAAGGAGAAGTGGATATGATAGATATTGG
ACAGGGTGACAGCATGTTTGTAGGTGCTCCGCATCAGCGGGGTCGTGTCTTAATTGATACCGGCGGCACTTTGTCTTACT
CGTCAGAGCCTTGGCGCGAAAAACAGCATCCGTTTTCACTGGGGGAAAAGGTGCTGATTCCGTTTTTAACTGCTAAGGGA
ATCAAACAGCTTGACGCTTTAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAGACTCTGCTGAAGTATCA
TAAAGTAAAGCGCCTCGTGATTCCGAAAGGGTTCGTTTCTGAACCTAAAGATGAGAAAGTGCTGCAGACAGCCAGAGAAG
AGGGAGTGACAATTGAAGAGGTGAAGCGAGGCGATGTATTGCAAATAAAGGATTTGCAGTTCCATGTACTGTCACCTGAA
GCACCTGATCCGGCAAGCAAAAATAATTCCTCTCTCGTTCTGTGGATGGAGACGGGCGGTATGAGCTGGATCTTGACGGG
TGATCTGGAGAAAGAAGGGGAACAGGAGGTGATGGACGTGTTTCCAAATATTAAAGCAGATGTCTTAAAGGTGGGGCACC
ATGGGAGCAAAGGCTCTACCGGTGAAGAATTCACCCAACAGCTTCAGCCGGAAACGGCCATTATCTCAGCTGGGAAAAAC
AATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTACAGAGACATTCTATCCGCGTGCTGCGAACAGATCAAAA
CGGAACGATCCAATATAGATACAAAAACAGAGGTGGAACCTTTTCTGTCTATCCTCCATATGATACATCAGATATAACAG
AGACGAACTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (208-469)

• Domain of unknown function (DUF4131) (DUF4131) (20-170)

• Metallo-beta-lactamase superfamily (Lactamase_B) (507-718)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Bacillus subtilis subsp. subtilis str. 168	97.809	100	0.978