Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | HWU09_RS02540 | Genome accession | NZ_CP058287 |
| Coordinates | 530645..531196 (+) | Length | 183 a.a. |
| NCBI ID | WP_050854277.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain AL04 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 525645..536196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWU09_RS02525 | cysS | 525831..527228 (-) | 1398 | WP_237003743.1 | cysteine--tRNA ligase | - |
| HWU09_RS02530 | murJ | 527229..528689 (-) | 1461 | WP_237003744.1 | murein biosynthesis integral membrane protein MurJ | - |
| HWU09_RS02535 | - | 528782..530620 (+) | 1839 | WP_237003745.1 | FapA family protein | - |
| HWU09_RS02540 | ruvA | 530645..531196 (+) | 552 | WP_050854277.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HWU09_RS02545 | - | 531287..531898 (+) | 612 | Protein_502 | DUF3519 domain-containing protein | - |
| HWU09_RS02550 | - | 531907..532326 (+) | 420 | Protein_503 | DUF3519 domain-containing protein | - |
| HWU09_RS07840 | - | 532734..532868 (+) | 135 | WP_272905078.1 | hypothetical protein | - |
| HWU09_RS02555 | - | 533392..534117 (-) | 726 | WP_000646757.1 | NYN domain-containing protein | - |
| HWU09_RS02560 | ruvC | 534248..534721 (+) | 474 | WP_000547784.1 | crossover junction endodeoxyribonuclease RuvC | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20178.76 Da Isoelectric Point: 9.4311
>NTDB_id=404378 HWU09_RS02540 WP_050854277.1 530645..531196(+) (ruvA) [Helicobacter pylori strain AL04]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS
Nucleotide
Download Length: 552 bp
>NTDB_id=404378 HWU09_RS02540 WP_050854277.1 530645..531196(+) (ruvA) [Helicobacter pylori strain AL04]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCCGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTCTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTTTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCCGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTCTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTTTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
93.989 |
100 |
0.94 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |