Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HWU09_RS02625 | Genome accession | NZ_CP058287 |
| Coordinates | 550671..551936 (+) | Length | 421 a.a. |
| NCBI ID | WP_237003357.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain AL04 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 545671..556936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWU09_RS02610 | - | 546090..548024 (+) | 1935 | WP_237003749.1 | type IA DNA topoisomerase | - |
| HWU09_RS07845 | - | 548024..548152 (+) | 129 | WP_269434334.1 | hypothetical protein | - |
| HWU09_RS02615 | - | 548154..549140 (+) | 987 | WP_237003750.1 | type IV secretion system protein | - |
| HWU09_RS02620 | - | 549140..550684 (+) | 1545 | WP_237003356.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HWU09_RS02625 | comB10 | 550671..551936 (+) | 1266 | WP_237003357.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HWU09_RS02630 | - | 552006..552299 (+) | 294 | WP_237003358.1 | hypothetical protein | - |
| HWU09_RS02635 | - | 552292..552555 (+) | 264 | WP_237003751.1 | hypothetical protein | - |
| HWU09_RS02640 | - | 552552..552851 (+) | 300 | WP_078286912.1 | hypothetical protein | - |
| HWU09_RS02645 | - | 552851..553790 (+) | 940 | Protein_524 | CpaF/VirB11 family protein | - |
| HWU09_RS02650 | - | 553787..554242 (+) | 456 | WP_237003752.1 | mobilization protein | - |
| HWU09_RS02655 | - | 554239..554529 (+) | 291 | WP_000159828.1 | hypothetical protein | - |
| HWU09_RS02660 | - | 554530..555087 (+) | 558 | WP_237003753.1 | hypothetical protein | - |
| HWU09_RS02665 | - | 555088..556815 (+) | 1728 | WP_237003754.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 421 a.a. Molecular weight: 47547.94 Da Isoelectric Point: 10.1431
>NTDB_id=404380 HWU09_RS02625 WP_237003357.1 550671..551936(+) (comB10) [Helicobacter pylori strain AL04]
MGFFRVIRNAPIASIFIVLMLIFCAWFFLYDDSSPKAVKKYVKGKFPISDYLYKKADKKKILPQNNVVKQEIKEEEIKKS
CKGQITDGKGNLIDDDCNIIATQKQVNNLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSI
KNSVSNIKSKDKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK
MGFFRVIRNAPIASIFIVLMLIFCAWFFLYDDSSPKAVKKYVKGKFPISDYLYKKADKKKILPQNNVVKQEIKEEEIKKS
CKGQITDGKGNLIDDDCNIIATQKQVNNLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSI
KNSVSNIKSKDKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK
Nucleotide
Download Length: 1266 bp
>NTDB_id=404380 HWU09_RS02625 WP_237003357.1 550671..551936(+) (comB10) [Helicobacter pylori strain AL04]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGCAAGTATCTTTATTGTTTTGATGCTTATTTTTTGCGCATGGTT
TTTCCTTTATGATGATAGTTCGCCTAAAGCAGTGAAAAAATATGTTAAAGGTAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGCGGACAAAAAGAAAATCCTACCACAGAACAATGTCGTTAAACAAGAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATAACAGATGGTAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAATTTACCAAATTTGCCTAAGGATTTTAATAAAACGCTTATTAAACCGCAAAGTCCATCCTTCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATA
AAAAATAGTGTTTCTAATATAAAATCCAAAGATAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTGAGAACGATTACGGCTGACAGAATGATCCCAGCCATTCTGA
TCACTCCTATTAGTAGTGAAATAGGGGGGAGTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAAGGGAGTAGAGCCATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAATAGGATAATCACGCCACAAGGGGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGCTATA
ACGGCATGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGG
CTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGA
TTACATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCA
GGATTAAGCCCATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGCAAGTATCTTTATTGTTTTGATGCTTATTTTTTGCGCATGGTT
TTTCCTTTATGATGATAGTTCGCCTAAAGCAGTGAAAAAATATGTTAAAGGTAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGCGGACAAAAAGAAAATCCTACCACAGAACAATGTCGTTAAACAAGAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATAACAGATGGTAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAATTTACCAAATTTGCCTAAGGATTTTAATAAAACGCTTATTAAACCGCAAAGTCCATCCTTCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATA
AAAAATAGTGTTTCTAATATAAAATCCAAAGATAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTGAGAACGATTACGGCTGACAGAATGATCCCAGCCATTCTGA
TCACTCCTATTAGTAGTGAAATAGGGGGGAGTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAAGGGAGTAGAGCCATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAATAGGATAATCACGCCACAAGGGGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGCTATA
ACGGCATGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGG
CTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGA
TTACATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCA
GGATTAAGCCCATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.483 |
68.884 |
0.375 |