Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GNG26_RS19540 Genome accession   NZ_CP046446
Coordinates   4123849..4125282 (+) Length   477 a.a.
NCBI ID   WP_103177192.1    Uniprot ID   -
Organism   Leclercia sp. J807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4118849..4130282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG26_RS19510 (GNG26_19510) - 4119416..4120393 (+) 978 WP_103824934.1 calcium/sodium antiporter -
  GNG26_RS19515 (GNG26_19515) kdsD 4120407..4121393 (+) 987 WP_103177188.1 arabinose-5-phosphate isomerase KdsD -
  GNG26_RS19520 (GNG26_19520) kdsC 4121408..4121974 (+) 567 WP_156239824.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  GNG26_RS19525 (GNG26_19525) lptC 4121971..4122546 (+) 576 WP_103824936.1 LPS export ABC transporter periplasmic protein LptC -
  GNG26_RS19530 (GNG26_19530) lptA 4122515..4123069 (+) 555 WP_103177190.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  GNG26_RS19535 (GNG26_19535) lptB 4123076..4123801 (+) 726 WP_103177191.1 LPS export ABC transporter ATP-binding protein -
  GNG26_RS19540 (GNG26_19540) rpoN/rpoN1 4123849..4125282 (+) 1434 WP_103177192.1 RNA polymerase factor sigma-54 Machinery gene
  GNG26_RS19545 (GNG26_19545) hpf 4125305..4125592 (+) 288 WP_103177193.1 ribosome hibernation promoting factor -
  GNG26_RS19550 (GNG26_19550) ptsN 4125675..4126166 (+) 492 WP_103177194.1 PTS IIA-like nitrogen regulatory protein PtsN -
  GNG26_RS19555 (GNG26_19555) rapZ 4126212..4127066 (+) 855 WP_032614487.1 RNase adapter RapZ -
  GNG26_RS19560 (GNG26_19560) npr 4127063..4127335 (+) 273 WP_032614489.1 PTS phosphocarrier protein NPr -
  GNG26_RS19565 (GNG26_19565) mtgA 4127332..4128057 (-) 726 WP_103824937.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  GNG26_RS19570 (GNG26_19570) elbB 4128054..4128707 (-) 654 WP_103177196.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54232.08 Da        Isoelectric Point: 4.3230

>NTDB_id=404352 GNG26_RS19540 WP_103177192.1 4123849..4125282(+) (rpoN/rpoN1) [Leclercia sp. J807]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVETQQSQDNETLDTVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLDD
ILESIGDDEIELEEVEAVLKRVQRFDPIGVAARDLRDCLLIQLSQFVKETPWLEEARLIISEHLDLLANHDFRSLMRVTR
LKEEILKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGLWTVELNSDSIPRLQINQQYASMCTSSRNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=404352 GNG26_RS19540 WP_103177192.1 4123849..4125282(+) (rpoN/rpoN1) [Leclercia sp. J807]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAGCTGGCAATGACGCCGCAGTTACAACAGGCTATTCGTCTGTTGCA
ACTGTCGACGCTGGAACTGCAGCAGGAGCTCCAGCAAGCGCTGGAAAGTAACCCCCTGCTCGAGCAAACCGATCTTCACG
ATGAGGTAGAAACGCAACAAAGCCAGGATAACGAGACCCTCGACACGGTTGATGCCCTTGAGCAAAAAGAGATGCCCGAC
GAGCTCCCTCTCGATGCCAGCTGGGATGAGATCTACACCGCCGGCACGCCATCCGGTACGCGCGCAGACTACCAGGATGA
CGAGCTGCCGGTCTATCAGGGCGAAACCACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAGCTGACACCGTTCT
CCGATACCGATCGCGCCATCGCCACCTCCATTGTGGATGCCGTGGATGAGACCGGTTACCTGACCGTGTCGCTGGACGAT
ATTCTGGAGAGCATAGGCGATGACGAGATTGAGCTTGAAGAGGTCGAAGCGGTCCTGAAACGCGTTCAGCGCTTTGACCC
GATTGGCGTTGCCGCGAGAGATCTCCGTGACTGCCTGCTCATTCAGCTTTCGCAGTTTGTTAAAGAGACCCCGTGGCTGG
AAGAGGCCCGGCTTATCATCAGCGAACATCTGGATCTGCTTGCCAACCACGATTTCCGCTCACTGATGCGCGTCACGCGG
CTGAAAGAGGAGATCCTGAAAGAGGCGGTCAACCTGATTCAGTCTCTGGATCCGCGCCCGGGGCAATCTATCCAGACCAG
CGAGCCGGAGTATGTCATTCCCGATGTGCTGGTGCGCAAGCATAACGGCCTGTGGACCGTCGAGCTGAATTCCGACAGCA
TTCCCCGCCTGCAAATCAATCAGCAATACGCCTCAATGTGCACCAGCTCGCGCAACGACTCGGATAACCAGTTTATCCGC
AGTAATCTGCAGGAAGCCCGCTGGCTAATCAAAAGCCTTGAGAGCCGCAATGATACACTGCTTCGCGTCAGCCGCTGCAT
CGTCGAGCAGCAGCAGGCGTTTTTTGAGCAGGGTGAAGAGTTTATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAGTCGACCATTTCTCGCGTGACGACGCAGAAGTATCTGCACAGTCCGCGTGGTATTTTTGAGCTTAAG
TATTTTTTCTCCAGCCATGTCAACACCGAAGGCGGCGGCGAAGCCTCGTCGACGGCCATCCGGGCGCTGGTGAAAAAATT
GATCGCCGCGGAAAACCCCGCGAAACCGCTGAGTGACAGTAAGTTGACCACCATGCTGTCCGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.525

100

0.491

Multiple sequence alignment