Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GNG26_RS07575 Genome accession   NZ_CP046446
Coordinates   1643027..1643656 (+) Length   209 a.a.
NCBI ID   WP_156238325.1    Uniprot ID   -
Organism   Leclercia sp. J807     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638027..1648656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG26_RS07555 (GNG26_07555) - 1638421..1640181 (-) 1761 WP_156238323.1 Lon protease family protein -
  GNG26_RS07560 (GNG26_07560) matP 1640368..1640823 (+) 456 WP_103178956.1 macrodomain Ter protein MatP -
  GNG26_RS07565 (GNG26_07565) ompA 1640890..1641945 (-) 1056 WP_156238324.1 porin OmpA -
  GNG26_RS07570 (GNG26_07570) sulA 1642300..1642809 (-) 510 WP_103178957.1 SOS-induced cell division inhibitor SulA -
  GNG26_RS07575 (GNG26_07575) sxy/tfoX 1643027..1643656 (+) 630 WP_156238325.1 TfoX/Sxy family DNA transformation protein Regulator
  GNG26_RS07580 (GNG26_07580) yccS 1643637..1645772 (-) 2136 WP_114315419.1 YccS family putative transporter -
  GNG26_RS07585 (GNG26_07585) - 1645791..1646237 (-) 447 WP_103178960.1 YccF domain-containing protein -
  GNG26_RS07590 (GNG26_07590) helD 1646361..1648415 (+) 2055 WP_156238326.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23972.73 Da        Isoelectric Point: 8.7907

>NTDB_id=404341 GNG26_RS07575 WP_156238325.1 1643027..1643656(+) (sxy/tfoX) [Leclercia sp. J807]
MKKLSYERIYQSAEYLSPLGKVHYRALFGGYTLAVDDTVFAMVSEGELYLRACEESAPYCVKHASTFLSLVKRGRPVLLN
YYRVDEGLWQDREKLLQLSSFALEAARRERSARYKRERLKDLPNLTFQLEILLYEAGITTEEALRALGAEQSWLKIKALN
KHLSYKVLFALEGAITGLHVAALPEVRRQELVEWYKKLPVETPLTPAAD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=404341 GNG26_RS07575 WP_156238325.1 1643027..1643656(+) (sxy/tfoX) [Leclercia sp. J807]
ATGAAAAAGTTATCGTATGAACGGATCTATCAATCAGCAGAATACCTGTCTCCTCTCGGCAAGGTGCACTATCGCGCCCT
GTTTGGCGGTTACACTCTGGCGGTAGATGACACGGTATTTGCCATGGTGTCGGAAGGGGAGTTATACCTGCGGGCCTGTG
AGGAGAGCGCACCTTACTGTGTAAAACATGCCTCGACTTTCCTGTCGCTGGTAAAGCGGGGGCGGCCTGTGTTGTTGAAC
TATTATCGCGTTGATGAAGGTCTCTGGCAGGATCGCGAAAAGCTTCTGCAGCTCTCCTCGTTTGCGCTGGAGGCGGCGCG
GCGGGAGCGCAGCGCACGCTATAAGCGCGAAAGGCTGAAAGATTTACCCAATCTCACCTTTCAACTGGAGATCCTGCTTT
ATGAAGCGGGCATCACCACCGAAGAGGCATTACGCGCGCTGGGGGCGGAGCAGTCCTGGCTGAAGATCAAAGCGCTGAAC
AAGCACCTCAGTTATAAGGTGCTGTTTGCACTGGAAGGGGCCATCACCGGGCTGCACGTCGCTGCACTCCCGGAAGTCAG
ACGCCAGGAGCTTGTGGAGTGGTACAAAAAGCTGCCGGTAGAGACTCCCCTTACTCCGGCAGCTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.101

94.737

0.569

Multiple sequence alignment