Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GNG27_RS08270 Genome accession   NZ_CP046445
Coordinates   1723940..1724566 (+) Length   208 a.a.
NCBI ID   WP_142488957.1    Uniprot ID   A0AAP9DCA6
Organism   Leclercia sp. 119287     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718940..1729566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG27_RS08250 (GNG27_08250) - 1719333..1721093 (-) 1761 WP_156263356.1 Lon protease family protein -
  GNG27_RS08255 (GNG27_08255) matP 1721280..1721735 (+) 456 WP_142488954.1 macrodomain Ter protein MatP -
  GNG27_RS08260 (GNG27_08260) ompA 1721803..1722858 (-) 1056 WP_156263357.1 porin OmpA -
  GNG27_RS08265 (GNG27_08265) sulA 1723213..1723722 (-) 510 WP_142488956.1 SOS-induced cell division inhibitor SulA -
  GNG27_RS08270 (GNG27_08270) sxy/tfoX 1723940..1724566 (+) 627 WP_142488957.1 TfoX/Sxy family DNA transformation protein Regulator
  GNG27_RS08275 (GNG27_08275) yccS 1724551..1726686 (-) 2136 WP_156263358.1 YccS family putative transporter -
  GNG27_RS08280 (GNG27_08280) - 1726705..1727151 (-) 447 WP_142488959.1 YccF domain-containing protein -
  GNG27_RS08285 (GNG27_08285) helD 1727275..1729329 (+) 2055 WP_156263359.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24061.51 Da        Isoelectric Point: 8.2273

>NTDB_id=404318 GNG27_RS08270 WP_142488957.1 1723940..1724566(+) (sxy/tfoX) [Leclercia sp. 119287]
MKKLSYERIYQSTKYLSPLGDVEHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAQYCVKNASSYLTLVKRGRAVLLN
YYRVDEALWQDRDKLLQLSSFALEAARRERRERYKRDRLKDLPNLTFQLEILLNEAGIANEEALRALGAEQCWLKIRELN
RHLSYKVLFALEGAIVGLHEAALPETRRRELVEWYKRLPVDNSTHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=404318 GNG27_RS08270 WP_142488957.1 1723940..1724566(+) (sxy/tfoX) [Leclercia sp. 119287]
ATGAAAAAGTTATCTTACGAGCGGATCTATCAATCAACAAAATATCTTTCTCCTCTCGGTGATGTTGAGCATCGTGCCCT
GTTTGGTGGATACACTCTGGCGGTGGATGACGCGGTCTTTGCGATGGTGTCAGACGGGGAGTTATACCTGCGCGCTTGCG
AAGAGAGCGCACAGTATTGCGTCAAAAATGCCTCCTCTTACTTAACGCTGGTGAAGCGGGGGCGCGCAGTATTGTTGAAT
TATTATCGCGTCGATGAGGCGCTCTGGCAGGATCGGGATAAGCTCCTGCAGCTCTCCTCATTTGCGCTTGAGGCCGCGCG
GCGGGAACGCCGGGAACGGTACAAGCGCGACAGGTTGAAAGATTTACCCAATCTCACCTTTCAGCTTGAGATCCTGCTGA
ACGAGGCGGGCATCGCCAACGAAGAGGCGTTACGCGCCCTCGGGGCCGAGCAGTGCTGGCTGAAGATCAGAGAGCTTAAC
AGGCACCTGAGCTACAAAGTGCTGTTCGCACTGGAAGGGGCGATCGTCGGATTGCATGAAGCTGCGCTCCCGGAGACAAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAAGGCTGCCGGTGGATAACAGCACTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.825

93.269

0.567

Multiple sequence alignment