Detailed information NTG0040419

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: MDS_RS26255
• Genome accession: NC_015410
• Coordinates: 979497..979676 (+)
• Length: 59 a.a.
• NCBI ID: WP_041769344.1
• Uniprot ID: -
• Organism: Ectopseudomonas mendocina NK-01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 974497..984676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MDS_RS04440 (MDS_0885)	pilD	974731..975597 (-)	867	WP_085982453.1	A24 family peptidase	Machinery gene
MDS_RS04445 (MDS_0886)	pilC	975601..976821 (-)	1221	WP_013714029.1	type II secretion system F family protein	Machinery gene
MDS_RS04450 (MDS_0887)	pilB	976825..978525 (-)	1701	WP_041769664.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MDS_RS26250 (MDS_0888)	-	978753..978938 (+)	186	WP_003242736.1	type IV pilin protein	-
MDS_RS25670	-	978950..979408 (+)	459	WP_147285547.1	hypothetical protein	-
MDS_RS26255	pilA	979497..979676 (+)	180	WP_041769344.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
MDS_RS04465 (MDS_0889)	-	979849..980553 (+)	705	WP_115299238.1	hypothetical protein	-
MDS_RS04470 (MDS_0890)	-	980556..981395 (+)	840	WP_013714032.1	hypothetical protein	-
MDS_RS04475 (MDS_0891)	-	981392..982303 (+)	912	WP_013714033.1	ABC transporter ATP-binding protein	-
MDS_RS04480 (MDS_0892)	nadC	982411..983259 (-)	849	WP_013714034.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 59 a.a.
• Molecular weight: 6568.77 Da
• Isoelectric Point: 10.3121

>NTDB_id=40419 MDS_RS26255 WP_041769344.1 979497..979676(+) (pilA) [Ectopseudomonas mendocina NK-01]
MVRRYSGFTLIELMIVVAIIGILAAIAIPQFNEYRAKANDANAQADVKNSLWIMASTRK

Nucleotide

• Length: 180 bp

>NTDB_id=40419 MDS_RS26255 WP_041769344.1 979497..979676(+) (pilA) [Ectopseudomonas mendocina NK-01]
ATGGTGCGGAGATATTCCGGTTTCACATTGATTGAGCTGATGATCGTGGTCGCGATCATCGGCATCCTTGCCGCCATCGC
CATTCCGCAGTTCAACGAGTATCGCGCCAAGGCCAACGATGCCAATGCCCAGGCCGATGTGAAGAATTCGCTTTGGATCA
TGGCTTCCACGCGGAAGTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (3-28)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Ralstonia pseudosolanacearum GMI1000	43.243	100	0.542
pilA	Pseudomonas aeruginosa PAK	65.217	77.966	0.508
pilA2	Legionella pneumophila str. Paris	64.444	76.271	0.492
pilA2	Legionella pneumophila strain ERS1305867	64.444	76.271	0.492
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	57.143	83.051	0.475
pilA/pilAI	Pseudomonas stutzeri DSM 10701	65.854	69.492	0.458
pilA	Acinetobacter nosocomialis M2	72.973	62.712	0.458
pilA	Acinetobacter baumannii strain A118	84.375	54.237	0.458
comE	Acinetobacter baylyi ADP1	54.167	81.356	0.441
pilA/pilAII	Pseudomonas stutzeri DSM 10701	60.976	69.492	0.424
comF	Acinetobacter baylyi ADP1	60.976	69.492	0.424
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	67.568	62.712	0.424
pilA	Vibrio parahaemolyticus RIMD 2210633	54.348	77.966	0.424
pilA	Vibrio campbellii strain DS40M4	69.444	61.017	0.424
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	66.667	61.017	0.407
pilA	Vibrio cholerae C6706	66.667	61.017	0.407
pilA	Vibrio cholerae strain A1552	66.667	61.017	0.407
pilA/pilA1	Eikenella corrodens VA1	75	54.237	0.407
comP	Acinetobacter baylyi ADP1	75	54.237	0.407
pilE	Acinetobacter baumannii D1279779	54.545	74.576	0.407
pilA	Haemophilus influenzae Rd KW20	71.875	54.237	0.39
pilA	Haemophilus influenzae 86-028NP	71.875	54.237	0.39
pilA/pilA4	Thermus thermophilus HB27	58.974	66.102	0.39
pilA	Glaesserella parasuis strain SC1401	70.968	52.542	0.373
pilA/pilA1	Synechocystis sp. PCC 6803	48.889	76.271	0.373
pilE	Neisseria gonorrhoeae strain FA1090	68.75	54.237	0.373
pilE	Neisseria gonorrhoeae MS11	68.75	54.237	0.373