Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HWI84_RS04095 Genome accession   NZ_CP058250
Coordinates   857850..858401 (-) Length   183 a.a.
NCBI ID   WP_237012722.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 852850..863401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS04080 ruvC 854544..855017 (-) 474 WP_015085935.1 crossover junction endodeoxyribonuclease RuvC -
  HWI84_RS04085 - 855149..855874 (+) 726 WP_000646757.1 NYN domain-containing protein -
  HWI84_RS07710 - 856676..857140 (-) 465 Protein_804 DUF3519 domain-containing protein -
  HWI84_RS07715 - 857149..857817 (-) 669 Protein_805 DUF3519 domain-containing protein -
  HWI84_RS04095 ruvA 857850..858401 (-) 552 WP_237012722.1 Holliday junction branch migration protein RuvA Machinery gene
  HWI84_RS04100 - 858426..860264 (-) 1839 WP_237012723.1 FapA family protein -
  HWI84_RS04105 murJ 860357..861817 (+) 1461 WP_237012724.1 murein biosynthesis integral membrane protein MurJ -
  HWI84_RS04110 cysS 861818..863215 (+) 1398 WP_237012725.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20258.91 Da        Isoelectric Point: 8.5032

>NTDB_id=404183 HWI84_RS04095 WP_237012722.1 857850..858401(-) (ruvA) [Helicobacter pylori strain AL02]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQQARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETKPMHNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=404183 HWI84_RS04095 WP_237012722.1 857850..858401(-) (ruvA) [Helicobacter pylori strain AL02]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAACAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACAAAACCCATGCATAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(140-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361