Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GNY17_RS14945 Genome accession   NZ_CP046411
Coordinates   2915284..2915898 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910284..2920898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS14935 (GNY17_14935) aceF 2911621..2913459 (+) 1839 WP_156216693.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GNY17_RS14940 (GNY17_14940) lpdA 2913729..2915156 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GNY17_RS14945 (GNY17_14945) opaR 2915284..2915898 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GNY17_RS14950 (GNY17_14950) hpt 2916217..2916747 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  GNY17_RS14955 (GNY17_14955) can 2916822..2917490 (-) 669 WP_005462578.1 carbonate dehydratase -
  GNY17_RS14960 (GNY17_14960) - 2917774..2919444 (+) 1671 WP_025792850.1 SulP family inorganic anion transporter -
  GNY17_RS14970 (GNY17_14970) - 2919698..2920615 (+) 918 WP_024702450.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=404158 GNY17_RS14945 WP_005479697.1 2915284..2915898(-) (opaR) [Vibrio parahaemolyticus strain 19-021-D1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=404158 GNY17_RS14945 WP_005479697.1 2915284..2915898(-) (opaR) [Vibrio parahaemolyticus strain 19-021-D1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAGCATGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment