Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GNT44_RS27515 | Genome accession | NZ_CP046402 |
| Coordinates | 5805229..5806101 (+) | Length | 290 a.a. |
| NCBI ID | WP_003094651.1 | Uniprot ID | A0AAQ3LID6 |
| Organism | Pseudomonas aeruginosa strain SE5331 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5800229..5811101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNT44_RS27490 (GNT44_27470) | nadC | 5800555..5801403 (+) | 849 | WP_003094645.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GNT44_RS27500 (GNT44_27480) | - | 5801607..5802071 (-) | 465 | WP_031630343.1 | pilin | - |
| GNT44_RS27505 (GNT44_27485) | pilB | 5802301..5804001 (+) | 1701 | WP_003094647.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GNT44_RS27510 (GNT44_27490) | pilC | 5804005..5805225 (+) | 1221 | WP_003094649.1 | type II secretion system F family protein | Machinery gene |
| GNT44_RS27515 (GNT44_27495) | pilD | 5805229..5806101 (+) | 873 | WP_003094651.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| GNT44_RS27520 (GNT44_27500) | coaE | 5806098..5806709 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| GNT44_RS27525 (GNT44_27505) | yacG | 5806706..5806906 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| GNT44_RS27530 (GNT44_27510) | - | 5806943..5807152 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| GNT44_RS27535 (GNT44_27515) | - | 5807258..5807947 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| GNT44_RS27540 (GNT44_27520) | - | 5807944..5808414 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| GNT44_RS27545 (GNT44_27525) | - | 5808411..5808836 (-) | 426 | WP_003094666.1 | GNAT family N-acetyltransferase | - |
| GNT44_RS27550 (GNT44_27530) | - | 5808969..5809598 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| GNT44_RS27555 (GNT44_27535) | - | 5809595..5810044 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| GNT44_RS27560 (GNT44_27540) | - | 5810070..5810240 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31852.89 Da Isoelectric Point: 7.7068
>NTDB_id=403972 GNT44_RS27515 WP_003094651.1 5805229..5806101(+) (pilD) [Pseudomonas aeruginosa strain SE5331]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=403972 GNT44_RS27515 WP_003094651.1 5805229..5806101(+) (pilD) [Pseudomonas aeruginosa strain SE5331]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.516 |
96.897 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |