Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GK020_RS13655 Genome accession   NZ_CP046392
Coordinates   2814749..2815384 (+) Length   211 a.a.
NCBI ID   WP_156189545.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2797741..2820931 2814749..2815384 within 0


Gene organization within MGE regions


Location: 2797741..2820931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS13590 - 2797741..2799066 (-) 1326 WP_156189540.1 ISNCY family transposase -
  GK020_RS13595 - 2799184..2800131 (+) 948 WP_156189541.1 metal-dependent hydrolase -
  GK020_RS13600 - 2800206..2802296 (-) 2091 WP_156189542.1 TonB-dependent receptor family protein -
  GK020_RS13605 - 2802649..2803110 (-) 462 Protein_2645 transposase -
  GK020_RS13610 - 2803186..2803569 (+) 384 WP_019836977.1 transposase -
  GK020_RS13615 tnpB 2803566..2803901 (+) 336 WP_000618091.1 IS66 family insertion sequence element accessory protein TnpB -
  GK020_RS13620 tnpC 2803976..2805664 (+) 1689 WP_156188950.1 IS66 family transposase -
  GK020_RS13625 - 2805700..2806343 (-) 644 Protein_2649 IS4-like element ISAba1 family transposase -
  GK020_RS13630 - 2806441..2807682 (-) 1242 WP_156189702.1 dicarboxylate/amino acid:cation symporter -
  GK020_RS16110 - 2807862..2807990 (+) 129 WP_194087061.1 YHYH domain-containing protein -
  GK020_RS13635 - 2808046..2808918 (-) 873 WP_045795317.1 acyl-CoA thioesterase -
  GK020_RS13640 plsB 2809223..2811787 (+) 2565 WP_045795316.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  GK020_RS13645 - 2811868..2812683 (-) 816 WP_156189543.1 SDR family oxidoreductase -
  GK020_RS13650 recG 2812717..2814762 (+) 2046 WP_156189544.1 ATP-dependent DNA helicase RecG -
  GK020_RS13655 comF 2814749..2815384 (+) 636 WP_156189545.1 ComF family protein Machinery gene
  GK020_RS13660 - 2815409..2815810 (-) 402 WP_104489521.1 NUDIX hydrolase -
  GK020_RS13665 - 2815813..2816406 (-) 594 WP_156189546.1 TIGR00730 family Rossman fold protein -
  GK020_RS13670 - 2816559..2817572 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  GK020_RS13675 - 2817713..2818000 (-) 288 WP_045795311.1 STAS domain-containing protein -
  GK020_RS13680 - 2818012..2818644 (-) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  GK020_RS13685 - 2818663..2819334 (-) 672 WP_005180325.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GK020_RS13690 mlaE 2819334..2820113 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  GK020_RS13695 - 2820110..2820931 (-) 822 WP_005180329.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24344.40 Da        Isoelectric Point: 9.0802

>NTDB_id=403811 GK020_RS13655 WP_156189545.1 2814749..2815384(+) (comF) [Acinetobacter indicus strain WMB-7]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVCRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=403811 GK020_RS13655 WP_156189545.1 2814749..2815384(+) (comF) [Acinetobacter indicus strain WMB-7]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTTTGTGCAGACTGTTTGCAACAACTGCCATGGTTAAAAGCAAACGTCTGCCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCCGTGGCAACCGA
GCGACTGGCAGAGCGTGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGTCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGACCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGACGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment