Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | GK020_RS06965 | Genome accession | NZ_CP046392 |
| Coordinates | 1445896..1446240 (+) | Length | 114 a.a. |
| NCBI ID | WP_264757085.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain WMB-7 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1440896..1451240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GK020_RS06935 | kdsB | 1441591..1442355 (+) | 765 | WP_104472237.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| GK020_RS06940 | - | 1442364..1443347 (+) | 984 | WP_104988682.1 | DNA polymerase III subunit delta' | - |
| GK020_RS06945 | - | 1443359..1443700 (+) | 342 | WP_005177501.1 | PilZ domain-containing protein | - |
| GK020_RS06950 | - | 1443730..1444503 (+) | 774 | WP_045795757.1 | TatD family hydrolase | - |
| GK020_RS06955 | - | 1444564..1445169 (+) | 606 | WP_045795756.1 | TetR/AcrR family transcriptional regulator | - |
| GK020_RS06960 | - | 1445184..1445756 (+) | 573 | WP_045795755.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GK020_RS06965 | xcpV | 1445896..1446240 (+) | 345 | WP_264757085.1 | type II secretion system protein GspI | Machinery gene |
| GK020_RS06970 | xcpW | 1446237..1446872 (+) | 636 | WP_104988680.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| GK020_RS06975 | gspK | 1446918..1447865 (+) | 948 | WP_156188936.1 | type II secretion system minor pseudopilin GspK | - |
| GK020_RS06980 | - | 1448013..1448609 (+) | 597 | WP_045795751.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| GK020_RS06985 | ung | 1448651..1449364 (+) | 714 | WP_156188937.1 | uracil-DNA glycosylase | - |
| GK020_RS06990 | - | 1449361..1450485 (+) | 1125 | WP_005177517.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GK020_RS06995 | tadA | 1450489..1451010 (+) | 522 | WP_104988678.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12599.36 Da Isoelectric Point: 6.7203
>NTDB_id=403800 GK020_RS06965 WP_264757085.1 1445896..1446240(+) (xcpV) [Acinetobacter indicus strain WMB-7]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPNTGQVEAGITHLVFFNHRVAQ
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPNTGQVEAGITHLVFFNHRVAQ
Nucleotide
Download Length: 345 bp
>NTDB_id=403800 GK020_RS06965 WP_264757085.1 1445896..1446240(+) (xcpV) [Acinetobacter indicus strain WMB-7]
ATGGTGGCACTGGCCATTTTCGCTACAGCTGCTATGGCACTGACCCAAGTGGCCATGCAATATACCCAGTCCACCTCTCA
TGCTATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTCACGG
GTACGCAATCAAAACAGGTCACCTTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCAATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
ATGGTGGCACTGGCCATTTTCGCTACAGCTGCTATGGCACTGACCCAAGTGGCCATGCAATATACCCAGTCCACCTCTCA
TGCTATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTCACGG
GTACGCAATCAAAACAGGTCACCTTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCAATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
75.893 |
98.246 |
0.746 |