Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   GK020_RS06970 Genome accession   NZ_CP046392
Coordinates   1446237..1446872 (+) Length   211 a.a.
NCBI ID   WP_104988680.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441237..1451872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS06935 kdsB 1441591..1442355 (+) 765 WP_104472237.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GK020_RS06940 - 1442364..1443347 (+) 984 WP_104988682.1 DNA polymerase III subunit delta' -
  GK020_RS06945 - 1443359..1443700 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  GK020_RS06950 - 1443730..1444503 (+) 774 WP_045795757.1 TatD family hydrolase -
  GK020_RS06955 - 1444564..1445169 (+) 606 WP_045795756.1 TetR/AcrR family transcriptional regulator -
  GK020_RS06960 - 1445184..1445756 (+) 573 WP_045795755.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GK020_RS06965 xcpV 1445896..1446240 (+) 345 WP_264757085.1 type II secretion system protein GspI Machinery gene
  GK020_RS06970 xcpW 1446237..1446872 (+) 636 WP_104988680.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GK020_RS06975 gspK 1446918..1447865 (+) 948 WP_156188936.1 type II secretion system minor pseudopilin GspK -
  GK020_RS06980 - 1448013..1448609 (+) 597 WP_045795751.1 6-pyruvoyl trahydropterin synthase family protein -
  GK020_RS06985 ung 1448651..1449364 (+) 714 WP_156188937.1 uracil-DNA glycosylase -
  GK020_RS06990 - 1449361..1450485 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  GK020_RS06995 tadA 1450489..1451010 (+) 522 WP_104988678.1 tRNA adenosine(34) deaminase TadA -
  GK020_RS07000 - 1451068..1451499 (+) 432 WP_104473640.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24207.52 Da        Isoelectric Point: 6.4849

>NTDB_id=403801 GK020_RS06970 WP_104988680.1 1446237..1446872(+) (xcpW) [Acinetobacter indicus strain WMB-7]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQSAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYVNLHQSGQDQPVSSVLLDNVSQFQVSVLNPQELSNW
PDSSIDLNDDQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=403801 GK020_RS06970 WP_104988680.1 1446237..1446872(+) (xcpW) [Acinetobacter indicus strain WMB-7]
ATGATTAAGGCTAAACGCGGATTTACCCTGGTCGAGCTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTGGG
CTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAATCAGTGGCATGAACAGCAGTTAGAAGGCTTGCAGAGTG
CCTATCAGCAAATATTGCGCGATAGTATTCAGATTGTACCGCTGACCGCCAACATCAATAATGATATTCAGCCAGCTCTG
GTATTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCCCCCACTGAACG
GATTGAATATCAGTACCGGGCCGACGAACAAAAACTGTATCGTCTGAAATATGTCAATTTGCATCAGTCCGGGCAGGATC
AGCCGGTTTCCAGCGTGTTATTGGATAATGTTAGCCAGTTTCAGGTTAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATGATCAACAAAAACGCAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACTGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment