Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GM421_RS04850 Genome accession   NZ_CP046390
Coordinates   940874..941449 (-) Length   191 a.a.
NCBI ID   WP_077300999.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii strain TS1-06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 935874..946449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM421_RS04830 (GM421_04830) dnaB 936577..937947 (-) 1371 WP_003622122.1 replicative DNA helicase -
  GM421_RS04835 (GM421_04835) rplI 937971..938426 (-) 456 WP_014564436.1 50S ribosomal protein L9 -
  GM421_RS04840 (GM421_04840) - 938449..940470 (-) 2022 WP_011677864.1 DHH family phosphoesterase -
  GM421_RS04845 (GM421_04845) rpsR 940611..940847 (-) 237 WP_003622127.1 30S ribosomal protein S18 -
  GM421_RS04850 (GM421_04850) ssb 940874..941449 (-) 576 WP_077300999.1 single-stranded DNA-binding protein Machinery gene
  GM421_RS04855 (GM421_04855) rpsF 941490..941783 (-) 294 WP_003612647.1 30S ribosomal protein S6 -
  GM421_RS04860 (GM421_04860) gyrA 942000..944471 (-) 2472 WP_156301288.1 DNA gyrase subunit A -
  GM421_RS04865 (GM421_04865) gyrB 944484..946445 (-) 1962 WP_011677861.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20552.22 Da        Isoelectric Point: 4.6437

>NTDB_id=403771 GM421_RS04850 WP_077300999.1 940874..941449(-) (ssb) [Lactobacillus delbrueckii strain TS1-06]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=403771 GM421_RS04850 WP_077300999.1 940874..941449(-) (ssb) [Lactobacillus delbrueckii strain TS1-06]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466

Multiple sequence alignment