Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GL187_RS08950 Genome accession   NZ_CP046379
Coordinates   1770941..1771651 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain 563     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1765941..1776651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS08935 (GL187_09060) - 1766482..1766730 (-) 249 WP_000364990.1 YneF family protein -
  GL187_RS08940 (GL187_09065) treC 1766986..1768611 (-) 1626 WP_016398080.1 alpha,alpha-phosphotrehalase -
  GL187_RS08945 (GL187_09070) treP 1768789..1770756 (-) 1968 WP_197097761.1 PTS system trehalose-specific EIIBC component -
  GL187_RS08950 (GL187_09075) treR 1770941..1771651 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  GL187_RS08955 (GL187_09080) - 1771684..1772487 (-) 804 WP_024477717.1 ABC transporter ATP-binding protein -
  GL187_RS08960 (GL187_09085) - 1772500..1773393 (-) 894 WP_024477718.1 ABC transporter permease -
  GL187_RS08965 (GL187_09090) - 1773405..1774007 (-) 603 WP_024477719.1 ABC transporter substrate-binding protein -
  GL187_RS08970 (GL187_09095) amiF 1774626..1775552 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  GL187_RS08975 (GL187_09100) amiE 1775563..1776630 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=403694 GL187_RS08950 WP_000760673.1 1770941..1771651(+) (treR) [Streptococcus pneumoniae strain 563]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=403694 GL187_RS08950 WP_000760673.1 1770941..1771651(+) (treR) [Streptococcus pneumoniae strain 563]
ATGAAAAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTTCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment