Detailed information NTG0403630

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GMX10_RS22320
• Genome accession: NZ_CP046377
• Coordinates: 4873248..4874093 (-)
• Length: 281 a.a.
• NCBI ID: WP_039512432.1
• Uniprot ID: -
• Organism: Pectobacterium parvum strain PZ1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4868248..4879093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GMX10_RS22295 (GMX10_22335)	-	4868315..4869085 (-)	771	WP_039484258.1	ABC transporter ATP-binding protein	-
GMX10_RS22300 (GMX10_22340)	-	4869087..4870106 (-)	1020	WP_080728062.1	iron ABC transporter permease	-
GMX10_RS22305 (GMX10_22345)	-	4870103..4871167 (-)	1065	WP_039512435.1	ABC transporter substrate-binding protein	-
GMX10_RS22310 (GMX10_22350)	-	4871645..4872670 (+)	1026	WP_039512434.1	LLM class flavin-dependent oxidoreductase	-
GMX10_RS22315 (GMX10_22355)	ypdK	4873028..4873102 (+)	75	WP_099606229.1	membrane protein YpdK	-
GMX10_RS22320 (GMX10_22360)	pilD	4873248..4874093 (-)	846	WP_039512432.1	A24 family peptidase	Machinery gene
GMX10_RS22325 (GMX10_22365)	-	4874187..4874933 (-)	747	WP_039484248.1	type II secretion system protein N	-
GMX10_RS22330 (GMX10_22370)	-	4874923..4875417 (-)	495	WP_039484245.1	type II secretion system protein M	-
GMX10_RS22335 (GMX10_22375)	gspL	4875414..4876691 (-)	1278	WP_039484241.1	type II secretion system protein GspL	-
GMX10_RS22340 (GMX10_22380)	gspK	4876688..4877674 (-)	987	WP_039484239.1	type II secretion system minor pseudopilin GspK	-
GMX10_RS22345 (GMX10_22385)	gspJ	4877671..4878321 (-)	651	WP_072012381.1	type II secretion system minor pseudopilin GspJ	-
GMX10_RS22350 (GMX10_22390)	gspI	4878324..4878686 (-)	363	WP_039484234.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31508.42 Da
• Isoelectric Point: 6.4558

>NTDB_id=403630 GMX10_RS22320 WP_039512432.1 4873248..4874093(-) (pilD) [Pectobacterium parvum strain PZ1]
MDDFREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLNDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFSVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=403630 GMX10_RS22320 WP_039512432.1 4873248..4874093(-) (pilD) [Pectobacterium parvum strain PZ1]
GTGGACGATTTCAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGCTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAACAGGCTATT
GCGGTCAAAGATAATATCCCGCTATTCAGCTGGTTGTGGCTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGTTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATCAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGCTGCTGTTTAATCTGTCGGAGACATTTGTCCCATTGAATGATGCTGTCGTTGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGTATTCAAATACGCGACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGTTGGCAGGCGTTGCCGAATCTGGTTTTGGTGGCGGCGCTGAGC
GGGTTGGTCGTTACTCTCGTCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCATTTGGCCCCTGGCTGGC
AATGGGCGGCGTGTTCAGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.815	96.441	0.48
pilD	Vibrio campbellii strain DS40M4	44.928	98.221	0.441
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Acinetobacter baumannii D1279779	42.491	97.153	0.413
pilD	Acinetobacter nosocomialis M2	42.125	97.153	0.409