Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GMW39_RS16015 Genome accession   NZ_CP046376
Coordinates   3421977..3423359 (+) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium parmentieri strain HC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3416977..3428359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMW39_RS15995 (GMW39_16050) - 3418409..3419623 (-) 1215 WP_161546501.1 type II toxin-antitoxin system HipA family toxin -
  GMW39_RS16000 (GMW39_16055) - 3419616..3419927 (-) 312 WP_012822313.1 helix-turn-helix domain-containing protein -
  GMW39_RS16005 (GMW39_16060) - 3420133..3420825 (-) 693 WP_014698672.1 YtjB family periplasmic protein -
  GMW39_RS16010 (GMW39_16065) serB 3420982..3421959 (+) 978 WP_014698671.1 phosphoserine phosphatase -
  GMW39_RS16015 (GMW39_16070) radA 3421977..3423359 (+) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  GMW39_RS16020 (GMW39_16075) nadR 3423491..3424738 (+) 1248 Protein_3159 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  GMW39_RS16025 (GMW39_16080) - 3424742..3425383 (-) 642 WP_161546101.1 5-formyltetrahydrofolate cyclo-ligase -
  GMW39_RS16035 (GMW39_16090) zapA 3425682..3426011 (-) 330 WP_005971092.1 cell division protein ZapA -
  GMW39_RS16040 (GMW39_16095) - 3426204..3426791 (+) 588 WP_012822308.1 YecA family protein -
  GMW39_RS16045 (GMW39_16100) pepP 3426853..3428178 (+) 1326 WP_012822307.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=403596 GMW39_RS16015 WP_005971086.1 3421977..3423359(+) (radA) [Pectobacterium parmentieri strain HC]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=403596 GMW39_RS16015 WP_005971086.1 3421977..3423359(+) (radA) [Pectobacterium parmentieri strain HC]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGTGGGGCTGATTACCCACGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTTCGCCTGGCGTCGGCGTCCGTATCACGCTCCGACCGTCTCACCGGCTATG
CGGGTGAGAGTGCAGGTGTCAGCCGGGTGCAAAAACTCTCGGAAATCAGCCTTGAAGCGTTACCCCGCTTTTCCACTGGC
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCGATCCTGATCGGCGGCAACCCCGGCGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTTACCGGGGAAGAATCCT
TGCAGCAGGTCGCGATGCGGGCACACAGGCTCAATCTGCCGACCCAGAATCTCAACATGCTGTCAGAAACCAGCATCGAA
CAAATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCTGGTCCGAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGACGGCGATGCCGATTCACGCTTCCGTACCCTACGTAGCCATAAAAACCGTTTCGGTGCCGTCAATGAGTT
GGGCGTGTTCGCCATGACGGAACAAGGGCTGCGTGAGATCAGCAATCCATCGGCCATTTTCCTCAGCCGCGGGGATGAAG
TGACGTCCGGTAGCTCGGTCATGGTGGTGTGGGAAGGTACACGCCCGCTGTTGGTTGAGATTCAGGCACTGGTAGATCAA
TCAATGATGGCTAACCCACGTCGCGTTGCCGTCGGATTAGAGCAAAACCGCCTGGCGATCCTGCTGGCAGTACTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAACGTCGTCGGCGGCGTCAAAGTGACCGAAACCAGTGCCG
ATCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCTGGCGAAATTCGTCCGGTTCCCAGCGGACAAGAGCGCATTACCGAGGCCGCCAAACACGGTTTTAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment