Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GL258_RS07445 | Genome accession | NZ_CP046363 |
| Coordinates | 1413797..1414768 (-) | Length | 323 a.a. |
| NCBI ID | WP_138071469.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain Epi0082 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1408797..1419768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GL258_RS07410 (GL258_07380) | gcvT | 1409492..1410577 (-) | 1086 | WP_138072996.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GL258_RS07415 (GL258_07385) | - | 1410715..1411221 (-) | 507 | WP_138071461.1 | shikimate kinase | - |
| GL258_RS07420 (GL258_07390) | - | 1411382..1411834 (-) | 453 | WP_164953583.1 | competence type IV pilus minor pilin ComGF | - |
| GL258_RS07425 | - | 1411779..1412021 (-) | 243 | WP_164953584.1 | hypothetical protein | - |
| GL258_RS07430 (GL258_07395) | comGD | 1412008..1412454 (-) | 447 | WP_223144709.1 | competence type IV pilus minor pilin ComGD | - |
| GL258_RS07435 (GL258_07400) | comGC | 1412426..1412758 (-) | 333 | WP_174804829.1 | competence type IV pilus major pilin ComGC | - |
| GL258_RS07440 (GL258_07405) | comGB | 1412773..1413783 (-) | 1011 | WP_188019093.1 | competence type IV pilus assembly protein ComGB | - |
| GL258_RS07445 (GL258_07410) | comGA | 1413797..1414768 (-) | 972 | WP_138071469.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GL258_RS07450 (GL258_07415) | - | 1414981..1415229 (+) | 249 | WP_086042733.1 | DUF2626 domain-containing protein | - |
| GL258_RS07455 (GL258_07420) | - | 1415256..1415876 (-) | 621 | WP_138071471.1 | MBL fold metallo-hydrolase | - |
| GL258_RS07460 (GL258_07425) | - | 1415966..1416205 (+) | 240 | WP_174804788.1 | DUF2759 domain-containing protein | - |
| GL258_RS07465 (GL258_07430) | - | 1416231..1416542 (-) | 312 | WP_086042736.1 | MTH1187 family thiamine-binding protein | - |
| GL258_RS07470 (GL258_07435) | - | 1416542..1417510 (-) | 969 | WP_164953587.1 | ROK family glucokinase | - |
| GL258_RS07475 (GL258_07440) | - | 1417507..1417698 (-) | 192 | WP_086042738.1 | YqgQ family protein | - |
| GL258_RS07480 (GL258_07445) | - | 1417703..1419130 (-) | 1428 | WP_188019094.1 | rhomboid family protein | - |
| GL258_RS07485 (GL258_07450) | - | 1419127..1419681 (-) | 555 | WP_164953588.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37245.84 Da Isoelectric Point: 6.8834
>NTDB_id=403553 GL258_RS07445 WP_138071469.1 1413797..1414768(-) (comGA) [Macrococcoides canis strain Epi0082]
MEKLFNEIIEVAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGTGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEKLFNEIIEVAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGTGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=403553 GL258_RS07445 WP_138071469.1 1413797..1414768(-) (comGA) [Macrococcoides canis strain Epi0082]
ATGGAAAAGTTATTCAATGAAATAATAGAGGTAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGTGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTTG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTTGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGACGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAAAAGTTATTCAATGAAATAATAGAGGTAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGTGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTTG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTTGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGACGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
49.39 |
100 |
0.502 |
| comGA | Staphylococcus aureus N315 |
49.39 |
100 |
0.502 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
38.037 |
100 |
0.384 |
| pilB | Glaesserella parasuis strain SC1401 |
34.012 |
100 |
0.362 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
34.513 |
100 |
0.362 |