Detailed information NTG0040348

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SALIVA_RS10125
• Genome accession: NC_017595
• Coordinates: 2196840..2197940 (+)
• Length: 366 a.a.
• NCBI ID: WP_014635202.1
• Uniprot ID: -
• Organism: Streptococcus salivarius JIM8777
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2191840..2202940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SALIVA_RS10100 (SALIVA_2069)	pgsA	2192382..2192924 (-)	543	WP_002885640.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SALIVA_RS10105 (SALIVA_2070)	-	2192937..2193794 (-)	858	WP_014635198.1	helix-turn-helix transcriptional regulator	-
SALIVA_RS10110 (SALIVA_2071)	yfmH	2193853..2195130 (-)	1278	WP_014635199.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SALIVA_RS10115 (SALIVA_2072)	yfmF	2195132..2196382 (-)	1251	WP_014635200.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SALIVA_RS10120 (SALIVA_2073)	yaaA	2196460..2196837 (+)	378	WP_014635201.1	S4 domain-containing protein YaaA	-
SALIVA_RS10125 (SALIVA_2074)	recF	2196840..2197940 (+)	1101	WP_014635202.1	DNA replication/repair protein RecF	Machinery gene
SALIVA_RS10130 (SALIVA_2075)	guaB	2198122..2199603 (-)	1482	WP_013991341.1	IMP dehydrogenase	-
SALIVA_RS10135 (SALIVA_2076)	trpS	2199782..2200804 (-)	1023	WP_002883969.1	tryptophan--tRNA ligase	-
SALIVA_RS10140 (SALIVA_2077)	-	2201233..2202105 (+)	873	WP_013991342.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42232.27 Da
• Isoelectric Point: 8.4088

>NTDB_id=40348 SALIVA_RS10125 WP_014635202.1 2196840..2197940(+) (recF) [Streptococcus salivarius JIM8777]
MWLEKIDIQHFRNYTETSVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGNIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=40348 SALIVA_RS10125 WP_014635202.1 2196840..2197940(+) (recF) [Streptococcus salivarius JIM8777]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAACCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTACTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAGC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCACATAGGGATGATTTGACATTTTA
CATCAATGACATGAACGCATCTTTCGGCAGTCAGGGGCAGCAACGTAGCCTCATTCTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAACCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTCAAGAATGGTAATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.363	97.814	0.639
recF	Bacillus subtilis subsp. subtilis str. 168	43.902	100	0.443