Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GL189_RS09640 Genome accession   NZ_CP046360
Coordinates   1878530..1879483 (-) Length   317 a.a.
NCBI ID   WP_000345122.1    Uniprot ID   A0A0I7TJC1
Organism   Streptococcus pneumoniae strain 574     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1873530..1884483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL189_RS09615 (GL189_09780) - 1874291..1874914 (-) 624 WP_000932659.1 hypothetical protein -
  GL189_RS09620 (GL189_09785) jag 1874965..1875951 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  GL189_RS09625 (GL189_09790) - 1875970..1876794 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  GL189_RS09630 (GL189_09795) rnpA 1876769..1877140 (-) 372 WP_000739247.1 ribonuclease P protein component -
  GL189_RS11185 - 1877157..1877288 (-) 132 WP_000768904.1 hypothetical protein -
  GL189_RS09635 (GL189_09800) - 1877289..1878479 (-) 1191 WP_000167765.1 acetate kinase -
  GL189_RS09640 (GL189_09805) comYH 1878530..1879483 (-) 954 WP_000345122.1 class I SAM-dependent methyltransferase Machinery gene
  GL189_RS09645 (GL189_09810) - 1879544..1880131 (-) 588 WP_000679779.1 class I SAM-dependent methyltransferase -
  GL189_RS09650 (GL189_09815) comGG/cglG 1880287..1880679 (-) 393 WP_001818028.1 competence type IV pilus minor pilin ComGG Machinery gene
  GL189_RS09655 (GL189_09820) comGF/cglF 1880657..1881118 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  GL189_RS09660 (GL189_09825) comGE/cglE 1881081..1881383 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  GL189_RS09665 (GL189_09830) comGD/cglD 1881346..1881750 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  GL189_RS09670 (GL189_09835) comGC/cglC 1881743..1882069 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  GL189_RS09675 (GL189_09840) comGB/cglB 1882071..1883087 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  GL189_RS09680 (GL189_09845) comGA/cglA/cilD 1883035..1883976 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  GL189_RS09685 (GL189_09850) - 1884051..1884416 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35745.94 Da        Isoelectric Point: 4.2706

>NTDB_id=403438 GL189_RS09640 WP_000345122.1 1878530..1879483(-) (comYH) [Streptococcus pneumoniae strain 574]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEMDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSNLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=403438 GL189_RS09640 WP_000345122.1 1878530..1879483(-) (comYH) [Streptococcus pneumoniae strain 574]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTTATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAATGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTAATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I7TJC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

53.994

98.738

0.533
  comYH Streptococcus mutans UA159

53.674

98.738

0.53

Multiple sequence alignment