Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GL188_RS08870 Genome accession   NZ_CP046359
Coordinates   1757604..1758530 (-) Length   308 a.a.
NCBI ID   WP_197120262.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 573     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752604..1763530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL188_RS08845 (GL188_09005) - 1752649..1753452 (-) 804 WP_024477717.1 ABC transporter ATP-binding protein -
  GL188_RS08850 (GL188_09010) - 1753465..1754358 (-) 894 WP_024477718.1 ABC transporter permease -
  GL188_RS08855 (GL188_09015) - 1754370..1754972 (-) 603 WP_024477719.1 ABC transporter substrate-binding protein -
  GL188_RS08860 (GL188_09020) amiF 1755591..1756517 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  GL188_RS08865 (GL188_09025) amiE 1756528..1757595 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator
  GL188_RS08870 (GL188_09030) amiD 1757604..1758530 (-) 927 WP_197120262.1 oligopeptide ABC transporter permease OppC Regulator
  GL188_RS08875 (GL188_09035) amiC 1758530..1760026 (-) 1497 WP_000759903.1 ABC transporter permease Regulator
  GL188_RS08880 (GL188_09040) amiA3 1760093..1762072 (-) 1980 WP_000742232.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34604.74 Da        Isoelectric Point: 9.7939

>NTDB_id=403349 GL188_RS08870 WP_197120262.1 1757604..1758530(-) (amiD) [Streptococcus pneumoniae strain 573]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRAHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=403349 GL188_RS08870 WP_197120262.1 1757604..1758530(-) (amiD) [Streptococcus pneumoniae strain 573]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTAACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTGCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

80.844

100

0.808
  amiD Streptococcus thermophilus LMD-9

80.844

100

0.808

Multiple sequence alignment