Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SALIVA_RS06610 Genome accession   NC_017595
Coordinates   1385060..1385740 (-) Length   226 a.a.
NCBI ID   WP_004182305.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380060..1390740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS06590 (SALIVA_1350) - 1380612..1381106 (-) 495 WP_014634688.1 YkgJ family cysteine cluster protein -
  SALIVA_RS06595 (SALIVA_1351) - 1381191..1383191 (-) 2001 WP_014634689.1 ABC transporter permease -
  SALIVA_RS06600 (SALIVA_1352) - 1383193..1383951 (-) 759 WP_014634690.1 ABC transporter ATP-binding protein -
  SALIVA_RS06605 (SALIVA_1353) - 1384096..1385070 (-) 975 WP_014634691.1 sensor histidine kinase -
  SALIVA_RS06610 (SALIVA_1354) braR 1385060..1385740 (-) 681 WP_004182305.1 response regulator transcription factor Regulator
  SALIVA_RS06615 (SALIVA_1355) - 1386190..1386771 (+) 582 WP_014634692.1 xanthine phosphoribosyltransferase -
  SALIVA_RS06620 (SALIVA_1356) - 1386771..1388039 (+) 1269 WP_014634693.1 nucleobase:cation symporter-2 family protein -
  SALIVA_RS10400 - 1388102..1389451 (-) 1350 Protein_1268 IS3 family transposase -
  SALIVA_RS06635 (SALIVA_1359) - 1389531..1389947 (-) 417 WP_037620510.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26073.42 Da        Isoelectric Point: 4.9992

>NTDB_id=40299 SALIVA_RS06610 WP_004182305.1 1385060..1385740(-) (braR) [Streptococcus salivarius JIM8777]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFDHAGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=40299 SALIVA_RS06610 WP_004182305.1 1385060..1385740(-) (braR) [Streptococcus salivarius JIM8777]
ATGCATAAGATTTTATTAGTGGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTTTTGTCTTCC
AGAGATCAGGCCATGGATATTGTTATGGCAATCAATATGGGTGGGGACGATTTTGTGACTAAACCTTTTGACCAAAATGT
TCTCCTAGCAAAAATTCAAGGGCTTTTGCGTCGTTCTTATGAGTTTGGTAAGGATCAGAGTCTCTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATTTGGTTTATCAGGGAGAGGTCGTTTCTTTGACAAAGAATGAGTTTCAGATTTTA
CAAGTTCTCTTTGATCATGCTGGTAATATCGTTAGTCGGGAAGACCTGATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGACAATACCCTGTCAGTTAATGTAGCTCGTTTACGTAAGAAGTTAGAGGCAGTGGGTTTGAAGGATTTTATTGAAA
CCAAGAAAGGTGTTGGCTACGGGTTGCGTCATGATGGGTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504
  micA Streptococcus pneumoniae Cp1015

35.043

100

0.363

Multiple sequence alignment