Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SALIVA_RS03095 Genome accession   NC_017595
Coordinates   632048..632644 (+) Length   198 a.a.
NCBI ID   WP_002889030.1    Uniprot ID   J7THI3
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 627048..637644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS03080 (SALIVA_0624) - 627973..628827 (+) 855 WP_002889033.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SALIVA_RS03085 (SALIVA_0625) - 628831..629667 (+) 837 WP_014634125.1 NAD(P)H-hydrate dehydratase -
  SALIVA_RS03090 (SALIVA_0626) pbp2b 629792..631906 (+) 2115 WP_014634126.1 penicillin-binding protein PBP2B -
  SALIVA_RS03095 (SALIVA_0627) recR 632048..632644 (+) 597 WP_002889030.1 recombination mediator RecR Machinery gene
  SALIVA_RS03100 (SALIVA_0628) licT 632748..633587 (+) 840 WP_037620560.1 BglG family transcription antiterminator LicT -
  SALIVA_RS03105 (SALIVA_0629) ybeY 633805..634302 (+) 498 WP_002886021.1 rRNA maturation RNase YbeY -
  SALIVA_RS03110 (SALIVA_0630) - 634283..634687 (+) 405 WP_004182934.1 diacylglycerol kinase family protein -
  SALIVA_RS03115 (SALIVA_0631) era 634710..635609 (+) 900 WP_014634128.1 GTPase Era -
  SALIVA_RS03120 (SALIVA_0632) mutM 635654..636475 (+) 822 WP_014634129.1 DNA-formamidopyrimidine glycosylase -
  SALIVA_RS03125 (SALIVA_0633) coaE 636472..637065 (+) 594 WP_014634130.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21768.93 Da        Isoelectric Point: 4.5326

>NTDB_id=40274 SALIVA_RS03095 WP_002889030.1 632048..632644(+) (recR) [Streptococcus salivarius JIM8777]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCNICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=40274 SALIVA_RS03095 WP_002889030.1 632048..632644(+) (recR) [Streptococcus salivarius JIM8777]
ATGCTTTATCCTACTCCAATTGCGAAGCTGATTGATAGTTTTTCAAAACTCCCTGGAATTGGGGCTAAAACAGCGACACG
CCTAGCTTTTTATACGATTAGCATGTCTGATGAAGATGTCAATGATTTCGCAAAAAACCTCTTGGCAGCAAAACGTGAAT
TGACTTATTGTTCGGTCTGTGGTCGTTTGACAGATGATGATCCATGTAACATTTGTACCGATGAAACCAGAGACCGTACT
AAGATTTTGGTTGTTGAAGACTCCAAAGATGTTTCAGCTATGGAAAAGATTCAGGAATACCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATTTCCCCTATGAATGGTGTTGGGCCAGATGATATTAACCTGAAAAGTTTGATTACCCGTCTTATGGACA
GCGAGGTTGACGAGGTTATCATTGCCACTAATGCAACAGCAGATGGTGAGGCAACATCTATGTATATTTCACGTGTCCTC
AAACCTGCAGGAATCAAGGTGACTCGTTTAGCGCGTGGTTTGGCTGTCGGTTCTGACATTGAGTATGCTGATGAAGTGAC
CTTGCTAAGAGCTATCGAAAATCGAACAGAACTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7THI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475