Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SALIVA_RS02340 Genome accession   NC_017595
Coordinates   465435..467420 (+) Length   661 a.a.
NCBI ID   WP_014634012.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460435..472420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02320 (SALIVA_0469) - 460767..461183 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  SALIVA_RS02325 (SALIVA_0470) ftsW 461442..462722 (+) 1281 WP_014634011.1 cell division peptidoglycan polymerase FtsW -
  SALIVA_RS02330 (SALIVA_0471) tuf 462960..464156 (+) 1197 WP_002886182.1 elongation factor Tu -
  SALIVA_RS02335 (SALIVA_0472) tpiA 464411..465169 (+) 759 WP_002885895.1 triose-phosphate isomerase -
  SALIVA_RS02340 (SALIVA_0473) recP/tkt 465435..467420 (+) 1986 WP_014634012.1 transketolase Machinery gene
  SALIVA_RS02350 (SALIVA_0475) tmk 467710..468339 (+) 630 WP_014634013.1 dTMP kinase -
  SALIVA_RS02355 (SALIVA_0476) - 468348..469223 (+) 876 WP_014634014.1 DNA polymerase III subunit delta' -
  SALIVA_RS02360 (SALIVA_0477) yaaT 469220..470026 (+) 807 WP_014634015.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  SALIVA_RS02365 (SALIVA_0478) yabA 470013..470333 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  SALIVA_RS02370 (SALIVA_0479) rsmI 470336..471202 (+) 867 WP_014634016.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70750.38 Da        Isoelectric Point: 4.7666

>NTDB_id=40266 SALIVA_RS02340 WP_014634012.1 465435..467420(+) (recP/tkt) [Streptococcus salivarius JIM8777]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVSMDDLKNFRQWGSKTPGHPEVDHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKAAFANEPVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLGGTAENAETGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=40266 SALIVA_RS02340 WP_014634012.1 465435..467420(+) (recP/tkt) [Streptococcus salivarius JIM8777]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCCATTCAAGCCGCGAATTC
TGGACACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTACTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGATCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGCCTCTTGCAC
CTTTCAGGCTATGATGTATCAATGGATGATTTGAAGAACTTCCGTCAATGGGGTTCTAAGACTCCAGGTCACCCTGAAGT
TGATCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTAGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTTAAGGATGGTAATGATTTGGAAGCTATTGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCACGCAAAAGGTGTTTACGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CTCGTCGTTTCGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGCTGCGGAATACAAGGCTGCCTTTGCGAATGAACCTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAATGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCTTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGGTGGTACAGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGCGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.991

99.546

0.567

Multiple sequence alignment