Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   FOC55_RS03350 Genome accession   NZ_CP046301
Coordinates   687495..688079 (+) Length   194 a.a.
NCBI ID   WP_002448199.1    Uniprot ID   A0A974QMC2
Organism   Staphylococcus hominis strain FDAARGOS_747     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 682495..693079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC55_RS03325 (FOC55_03325) - 683371..684738 (-) 1368 WP_002455515.1 isochorismate synthase -
  FOC55_RS03330 (FOC55_03330) - 684920..685858 (+) 939 WP_002448221.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FOC55_RS03335 (FOC55_03335) - 685906..686457 (-) 552 WP_064207286.1 GNAT family N-acetyltransferase -
  FOC55_RS03340 (FOC55_03340) - 686601..686813 (+) 213 WP_002448068.1 TM2 domain-containing protein -
  FOC55_RS11285 - 686903..687001 (+) 99 WP_017175792.1 SAR1012 family small protein -
  FOC55_RS03345 (FOC55_03345) - 687069..687287 (-) 219 WP_002448162.1 IDEAL domain-containing protein -
  FOC55_RS03350 (FOC55_03350) comK/comK1 687495..688079 (+) 585 WP_002448199.1 competence protein ComK Regulator
  FOC55_RS03365 (FOC55_03365) - 688482..689471 (-) 990 WP_002455519.1 lipoate--protein ligase -
  FOC55_RS03370 (FOC55_03370) - 689660..689836 (+) 177 WP_002448045.1 YkvS family protein -
  FOC55_RS03375 (FOC55_03375) - 689852..690454 (+) 603 WP_002448227.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FOC55_RS03380 (FOC55_03380) - 690618..691976 (-) 1359 WP_155967800.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22940.27 Da        Isoelectric Point: 9.6668

>NTDB_id=402441 FOC55_RS03350 WP_002448199.1 687495..688079(+) (comK/comK1) [Staphylococcus hominis strain FDAARGOS_747]
MTQFNKPPNTIYVIRKGDMVIRPTFDNHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=402441 FOC55_RS03350 WP_002448199.1 687495..688079(+) (comK/comK1) [Staphylococcus hominis strain FDAARGOS_747]
ATGACTCAGTTCAATAAACCACCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACATTTGACAA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGCCCTTTTAAAACTCAAAAAATTA
TTGAACGATCATGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATCGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAGAACAGAAAGAGTAAAATTATCTTTGCAAACCAAGAAGCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAGTCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCCCTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

73.913

94.845

0.701
  comK/comK1 Staphylococcus aureus N315

73.913

94.845

0.701

Multiple sequence alignment