Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SALIVA_RS00200 Genome accession   NC_017595
Coordinates   26772..27545 (+) Length   257 a.a.
NCBI ID   WP_014633756.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 21772..32545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS00180 (SALIVA_0033) mreD 22232..22756 (+) 525 WP_014633752.1 rod shape-determining protein MreD -
  SALIVA_RS00185 (SALIVA_0034) - 22841..24340 (+) 1500 WP_014633753.1 CHAP domain-containing protein -
  SALIVA_RS00190 (SALIVA_0035) - 24552..25517 (+) 966 WP_014633754.1 ribose-phosphate diphosphokinase -
  SALIVA_RS00195 (SALIVA_0036) - 25610..26785 (+) 1176 WP_014633755.1 pyridoxal phosphate-dependent aminotransferase -
  SALIVA_RS00200 (SALIVA_0037) recO 26772..27545 (+) 774 WP_014633756.1 DNA repair protein RecO Machinery gene
  SALIVA_RS00205 (SALIVA_0038) plsX 27757..28761 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  SALIVA_RS00210 (SALIVA_0039) - 28761..29006 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  SALIVA_RS00215 (SALIVA_0040) purC 29265..29972 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29641.75 Da        Isoelectric Point: 4.8532

>NTDB_id=40238 SALIVA_RS00200 WP_014633756.1 26772..27545(+) (recO) [Streptococcus salivarius JIM8777]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDCFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=40238 SALIVA_RS00200 WP_014633756.1 26772..27545(+) (recO) [Streptococcus salivarius JIM8777]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTAGC
AGATGCACAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCATTATGCAGAGGATGAAAGGCGTAGTCACTTAGA
TCCTAATGTACCTTATCTTTTAGATTGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619

Multiple sequence alignment