Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUT14_RS19090 Genome accession   NZ_CP054939
Coordinates   4214204..4215613 (-) Length   469 a.a.
NCBI ID   WP_176117895.1    Uniprot ID   -
Organism   Streptomyces sp. NA02536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4209204..4220613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT14_RS19070 (HUT14_19080) - 4210594..4211259 (+) 666 WP_121546964.1 response regulator transcription factor -
  HUT14_RS19075 (HUT14_19085) - 4211266..4211919 (-) 654 WP_176117894.1 phosphatase PAP2 family protein -
  HUT14_RS19080 (HUT14_19090) - 4212094..4212969 (+) 876 WP_121546966.1 hypothetical protein -
  HUT14_RS19085 (HUT14_19095) disA 4213013..4214137 (-) 1125 WP_004928018.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HUT14_RS19090 (HUT14_19100) radA 4214204..4215613 (-) 1410 WP_176117895.1 DNA repair protein RadA Machinery gene
  HUT14_RS19095 (HUT14_19105) - 4215799..4217571 (+) 1773 WP_176117896.1 sigma-70 family RNA polymerase sigma factor -
  HUT14_RS19100 (HUT14_19110) - 4217598..4218482 (-) 885 WP_176117897.1 hypothetical protein -
  HUT14_RS19105 (HUT14_19115) - 4218578..4219510 (+) 933 WP_142169164.1 Ppx/GppA phosphatase family protein -
  HUT14_RS19110 (HUT14_19120) - 4219593..4220423 (+) 831 WP_121546968.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49630.70 Da        Isoelectric Point: 7.7527

>NTDB_id=402253 HUT14_RS19090 WP_176117895.1 4214204..4215613(-) (radA) [Streptomyces sp. NA02536]
MAARTKSSKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASAEHPTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPPGMKVLEVADIGDALQVLPRSRRRDAPRDEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=402253 HUT14_RS19090 WP_176117895.1 4214204..4215613(-) (radA) [Streptomyces sp. NA02536]
ATGGCTGCCCGTACCAAGAGCTCCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGGCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACGCCCGGGC
GGGTCACCACCTCCGCCGTGCCGATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGTTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCGGTGGTGCTGGTCGCGGGCGAGCCGGGTGTGGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGCCGAGCACCCCACGCTGTACGTGACCGGGGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCGGACCGCATCCACGCCATCGACGACCATCTCTACCTGGCCGCCGAGACGGATCTGTCCGCCGTGCTC
GGGCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCATGGACTCGGTGCAGACGGTGGCGTCCCCGGAGATCGACGGCGC
CCCGGGCGGCATGGCCCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGTCTGCTGGAACACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGCGGGGTGAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTGGCGGACCCGAGCGGACTTTTCCTGACCAGACGTGCCGAACCGGTCCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTGCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCGCGCGTGTCGATGATGCTCGCGGTGCTGGAACAGCGCGGCCG
CATCAGCGCCTTGGGCAAACGGGACATCTACTCCGCGACGGTCGGCGGGGTGAAGCTCTCGGAGCCGGCCGCGGACCTGG
CCGTCGCGCTCGCGCTGGCGTCGGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTCGGCCTG
GCCGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCCCACCGTCTGGGCTTCACGCACGCCCTGGT
TCCGGGCGATCCGGGCAAGGTCCCGCCGGGCATGAAGGTGCTGGAAGTGGCGGACATAGGGGACGCGCTGCAGGTTCTTC
CCCGCTCCCGTCGCCGAGACGCCCCACGGGACGAGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

43.333

95.949

0.416
  radA Streptococcus mitis SK321

43.333

95.949

0.416
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.588

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412