Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HUT14_RS18225 Genome accession   NZ_CP054939
Coordinates   4026344..4026943 (+) Length   199 a.a.
NCBI ID   WP_004928577.1    Uniprot ID   D9XJS8
Organism   Streptomyces sp. NA02536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4021344..4031943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT14_RS18210 (HUT14_18220) - 4023332..4024876 (+) 1545 WP_176117811.1 substrate-binding domain-containing protein -
  HUT14_RS18215 (HUT14_18225) - 4024899..4025648 (-) 750 WP_121546860.1 SLATT domain-containing protein -
  HUT14_RS18220 (HUT14_18230) - 4025922..4026266 (+) 345 WP_004928579.1 YbaB/EbfC family nucleoid-associated protein -
  HUT14_RS18225 (HUT14_18235) recR 4026344..4026943 (+) 600 WP_004928577.1 recombination mediator RecR Machinery gene
  HUT14_RS18230 (HUT14_18240) - 4026936..4027595 (+) 660 WP_176117812.1 DUF5063 domain-containing protein -
  HUT14_RS18235 (HUT14_18245) - 4027644..4028198 (-) 555 WP_228313005.1 M23 family metallopeptidase -
  HUT14_RS18240 (HUT14_18250) - 4028516..4029793 (+) 1278 WP_004928564.1 aspartate kinase -
  HUT14_RS18245 (HUT14_18255) - 4029793..4030899 (+) 1107 WP_176117813.1 aspartate-semialdehyde dehydrogenase -
  HUT14_RS18250 (HUT14_18260) - 4031360..4031935 (+) 576 WP_040906587.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21800.14 Da        Isoelectric Point: 5.1558

>NTDB_id=402249 HUT14_RS18225 WP_004928577.1 4026344..4026943(+) (recR) [Streptomyces sp. NA02536]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALMEVKAKVRFCATCGNVAQEEQCNICRDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=402249 HUT14_RS18225 WP_004928577.1 4026344..4026943(+) (recR) [Streptomyces sp. NA02536]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAACCCACGGACGTACGCCGCCTCGCGCACGCGCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCCACCTGCGGAAACGTGGCGCAGGAGGAGCAGTGCAACATCTGCCGCGATCCGCGCCGCGACCCGGCCGTC
ATCTGTGTCGTGGAGGAACCCAAGGACGTCGTGGCGATCGAGCGCACCCGCGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCCATCGACGGGGTGGGCCCGGACGACCTGCGGATACGGGAGCTGCTGGCCCGGCTGGCCGACGGCA
CGGTCACGGAGCTCATCCTGGCCACGGACCCCAATCTCGAGGGCGAGGCCACGGCGACGTACCTCGCTCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGAGACCTGGAATACGCGGACGAGGTCACCCT
CGGACGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9XJS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457