Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   Vspart_RS18720 Genome accession   NZ_CP046269
Coordinates   476037..477137 (+) Length   366 a.a.
NCBI ID   WP_370738654.1    Uniprot ID   -
Organism   Vibrio spartinae strain 3.6     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 471037..482137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS18690 (Vspart_03865) cbiB 471766..472728 (+) 963 WP_182289087.1 adenosylcobinamide-phosphate synthase CbiB -
  Vspart_RS18695 (Vspart_03866) - 472774..473187 (+) 414 WP_074371200.1 NUDIX hydrolase -
  Vspart_RS18700 (Vspart_03867) - 473280..473753 (-) 474 WP_074371104.1 peroxiredoxin -
  Vspart_RS18705 (Vspart_03869) - 474025..474342 (-) 318 WP_074371103.1 DUF496 family protein -
  Vspart_RS18710 (Vspart_03871) - 474823..475473 (+) 651 WP_074371101.1 YceH family protein -
  Vspart_RS18715 (Vspart_03872) - 475480..475779 (+) 300 WP_182289088.1 GIY-YIG nuclease family protein -
  Vspart_RS18720 (Vspart_03874) luxP 476037..477137 (+) 1101 WP_370738654.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  Vspart_RS18725 (Vspart_03875) luxQ 477178..479760 (+) 2583 WP_182289089.1 LuxQ periplasmic sensor domain-containing protein Regulator
  Vspart_RS18730 (Vspart_03876) - 479844..480371 (-) 528 WP_228449085.1 hypothetical protein -
  Vspart_RS18735 (Vspart_03877) - 480548..482023 (+) 1476 WP_182289090.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42212.29 Da        Isoelectric Point: 6.9760

>NTDB_id=402177 Vspart_RS18720 WP_370738654.1 476037..477137(+) (luxP) [Vibrio spartinae strain 3.6]
MNEKMIMRLFGVILTTCFLVYHSAAYALSGYWHYNEFLDLNPKQKQLTLSLANAVRLEPKPLQATQKHPVKISVIYPGQQ
VSDYWSRNIRAFELRLNELDIKYEIHQVFTRPNLDIRQQSLSLMEALKNKSDYLIFTLDTTRHRKFIEHVLRGRETKMIL
QNVTTPVKDWAHQQPWMYIGFDHEIGTGMLVDYFKKKLKPHSPYSVLYFSQGYVSEARGDTFIQAMTEYPLVSSFYTQAN
QESAYKITLENMTEHPEIKLLYACSTDVALGAVKALKELGREDVLINGWGGGSAELEAIQHHDLDVTVMRMNDDTGVAMA
EAIKWDLEGKKVPTVYSGDFEVVSSADQPERVEALKQRAFRYSDRH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=402177 Vspart_RS18720 WP_370738654.1 476037..477137(+) (luxP) [Vibrio spartinae strain 3.6]
ATTAATGAGAAGATGATAATGAGACTTTTTGGCGTTATTTTAACCACCTGCTTCCTTGTTTATCATTCAGCAGCGTATGC
GTTAAGCGGCTATTGGCATTACAACGAATTTCTTGATTTAAACCCCAAGCAAAAGCAATTGACACTCTCTTTGGCAAATG
CGGTTCGGCTTGAGCCGAAGCCATTACAGGCGACTCAGAAACACCCAGTAAAAATATCGGTGATTTATCCCGGCCAGCAA
GTCTCGGATTATTGGAGCCGTAACATTCGGGCTTTTGAATTACGCTTGAATGAGCTGGATATCAAGTATGAAATTCATCA
AGTGTTTACGCGCCCGAATCTGGATATTCGTCAACAAAGTCTGTCTTTGATGGAAGCATTAAAGAATAAATCCGACTATT
TGATTTTTACGCTCGATACCACCAGACACAGAAAATTTATTGAGCATGTGTTAAGAGGCCGAGAAACCAAAATGATTTTA
CAGAATGTGACGACACCCGTGAAAGACTGGGCTCACCAACAACCTTGGATGTATATCGGTTTTGACCATGAAATTGGAAC
TGGCATGTTGGTGGATTATTTTAAGAAAAAATTGAAACCCCATTCACCTTATTCTGTGCTGTATTTTTCACAAGGCTATG
TGAGCGAAGCCCGAGGTGATACCTTCATTCAAGCGATGACTGAATACCCGCTCGTCTCATCATTTTATACTCAGGCCAAT
CAGGAAAGTGCCTATAAAATTACACTTGAGAATATGACAGAGCATCCGGAGATTAAATTGTTGTATGCCTGTTCAACCGA
TGTTGCTCTCGGTGCAGTGAAAGCCTTGAAAGAACTCGGCAGAGAGGATGTTCTCATCAATGGCTGGGGTGGCGGTTCTG
CCGAGCTGGAGGCGATACAGCATCATGATTTGGATGTCACGGTGATGCGAATGAATGATGACACCGGTGTTGCAATGGCA
GAAGCCATCAAGTGGGATCTTGAAGGGAAAAAGGTACCGACGGTTTATTCCGGGGACTTTGAGGTAGTTTCCAGTGCAGA
TCAACCCGAGCGAGTTGAAGCGTTGAAACAACGAGCATTCCGGTATTCTGATCGACACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.859

100

0.642

Multiple sequence alignment